BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0143.0010.p
         (131 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310434|ref|YP_003774526.1| 2-keto-4-hydroxyglutarate aldol...   216   4e-58
gi|300310363|ref|YP_003774455.1| 2-dehydro-3-deoxy-6-phosphogala...    58   2e-10

>gi|300310434|ref|YP_003774526.1| 2-keto-4-hydroxyglutarate
           aldolase/-keto-3-deoxy-6-phosphogluconate aldolase
           [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score =  216 bits (551), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 112/124 (90%), Positives = 116/124 (93%)

Query: 4   LDIMRTSAVIPVIAIDKLEHAVPLAKALVAGGIRVLEVTLRTEHGLPAIRAIAEQVPEAI 63
           L+IMR S VIPVIAIDK EHAVPLA+ALVAGGIRVLE+TLRTEHGLPAIRAIAE VP+AI
Sbjct: 5   LEIMRASPVIPVIAIDKFEHAVPLARALVAGGIRVLEITLRTEHGLPAIRAIAESVPDAI 64

Query: 64  VGVGTLTSPEEFAASRDAGAVFGVSPGLTAALIAAAKSSGLPLLPGVMTPSEVMAAREAG 123
           VGVGTLTSPEEF ASRDAGAVFGVSPGLT ALI AAK SGLPLLPGVMTPSEVMAAREAG
Sbjct: 65  VGVGTLTSPEEFTASRDAGAVFGVSPGLTPALIEAAKRSGLPLLPGVMTPSEVMAAREAG 124

Query: 124 FRQL 127
           FRQL
Sbjct: 125 FRQL 128


>gi|300310363|ref|YP_003774455.1|
           2-dehydro-3-deoxy-6-phosphogalactonate aldolase
           [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score = 58.2 bits (139), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 5   DIMRTSAVIPVIAIDKLEHAVPLAKALVAGGIRVLEVTLRTEHGLPAIRAIAEQVP-EAI 63
           D +R++ +I ++   +   A  +  AL   G R++EV L +   L +I A+ + +P + I
Sbjct: 10  DALRSTGMIAILRGVRNAEAEAIGAALYESGFRIIEVPLNSPEPLLSITALRKSLPADCI 69

Query: 64  VGVGTLTSPEEFAASRDAGAVFGVSPGLTAALIAAAKSSGLPLLPGVMTPSEVMAAREAG 123
           VG GT+  P +    +DAG    V P    A+I AA+ +GL   PGV T +E  AA + G
Sbjct: 70  VGAGTVLKPAQVEQVKDAGGELIVMPHSDGAVIRAARDAGLYSAPGVATVTEAFAALDNG 129


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 432,316
Number of extensions: 17441
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 131
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 56
Effective length of database: 1,264,745
Effective search space: 70825720
Effective search space used: 70825720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)