BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0007.p (555 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310432|ref|YP_003774524.1| glucose-6-phosphate isomerase [... 826 0.0 gi|300311812|ref|YP_003775904.1| glucose-6-phosphate isomerase [... 563 e-161 >gi|300310432|ref|YP_003774524.1| glucose-6-phosphate isomerase [Herbaspirillum seropedicae SmR1] Length = 554 Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/548 (74%), Positives = 452/548 (82%), Gaps = 3/548 (0%) Query: 4 MPHTALTATAAFQALLSHHAEVRDRHMRDLFAADPQRFDNMTVKAAGILLDYSKNRVDHT 63 M TALT TAAF+AL HHA+ HMR+LFA P RF+ M V+AAG+LLDYSKNR++ Sbjct: 1 MHTTALTDTAAFKALQHHHAKAVTWHMRELFAQQPDRFERMHVRAAGLLLDYSKNRIESE 60 Query: 64 TLKLLFELARERGVERQRAAMFSGEKINFTEHRAVLHTALRAPRGQAL--IVDGQHVGED 121 TL LL LARERGVE R AMF GEKINFTEHRAVLHTALRAP QA VDGQ V ++ Sbjct: 61 TLALLMSLARERGVEALREAMFRGEKINFTEHRAVLHTALRAP-AQACDAQVDGQPVSQE 119 Query: 122 VHAVLDRIHSFTERVRESQWLGLSGKPITDIVNIGIGGSHLGPQMACTALRTFAHPRLTM 181 VHAVLD I F+ERVR W G +G+ ITDIVNIGIGGS LGPQM CTALR + H RLT Sbjct: 120 VHAVLDHIRDFSERVRSGAWRGYTGREITDIVNIGIGGSFLGPQMVCTALRNYRHARLTT 179 Query: 182 HFVSNVDGHDLHDVLQRVDVETTLFIVASKTFTTQETMMNAGSARDWFLQRAAAADLAKH 241 HFVSNVDGHDL +VL RVD ETTLFIVASKTFTTQETM+NA SAR WFL+ ADLA+H Sbjct: 180 HFVSNVDGHDLDEVLSRVDPETTLFIVASKTFTTQETMLNAKSARAWFLRHGQQADLARH 239 Query: 242 FVAVSTNTEAVRAFGIDTDNMFPFWDWVGGRYSMWSSIGLSIALAIGFKNFSELLAGAHA 301 FVAVSTN V +FGID DNMFPFWDWVGGRYS+WS+IGL IAL IGF++FS LAGAHA Sbjct: 240 FVAVSTNAAEVESFGIDPDNMFPFWDWVGGRYSVWSAIGLPIALLIGFEHFSAFLAGAHA 299 Query: 302 MDKHFCEAPLERNMPIIQALIGIWNRNCFNSESLSIAPYHHDLRHFPAYLQQLEMESNGK 361 MD+HF +APLE NMP+IQALIGIWNRN FNSESLS+APYH LR+FPAYLQQL+MESNGK Sbjct: 300 MDRHFRDAPLEANMPVIQALIGIWNRNFFNSESLSVAPYHQWLRYFPAYLQQLDMESNGK 359 Query: 362 RITRDGSAVGVATCPFIWGDVGTNGQHAFFQLLHQGTDITPIDFIAVLHATHDLPGHHAV 421 RITRDG+ VGVATCPFIWGDVGTNGQHAFFQLLHQGT++TPIDFIAVL +H + H V Sbjct: 360 RITRDGTPVGVATCPFIWGDVGTNGQHAFFQLLHQGTNVTPIDFIAVLKPSHGIDEHQDV 419 Query: 422 LLANCFAQSEAFMRGKQAEEVRDDLKKLGVDDDEINFLLPHKTFNGNRPSNTLLLDALTP 481 LLANCFAQSEAFMRGKQA+EVR DL++ GVD E+ LLPHKTF+GNRPSNTLLL L+P Sbjct: 420 LLANCFAQSEAFMRGKQADEVRADLERQGVDAAELAALLPHKTFDGNRPSNTLLLPELSP 479 Query: 482 ATLGALIALYEHKTFVQGTIWGINSFDQWGVELGKVLAKTIQSELAGEAVPARHDCSTNA 541 LGA+IALYEHKTFVQG IWGINSFDQWGVELGKVLAKTI EL E PA HD STNA Sbjct: 480 HALGAMIALYEHKTFVQGAIWGINSFDQWGVELGKVLAKTIHGELRSEPNPALHDASTNA 539 Query: 542 LIALAKKA 549 LIALA++A Sbjct: 540 LIALARQA 547 >gi|300311812|ref|YP_003775904.1| glucose-6-phosphate isomerase [Herbaspirillum seropedicae SmR1] Length = 570 Score = 563 bits (1451), Expect = e-161, Method: Compositional matrix adjust. Identities = 285/550 (51%), Positives = 368/550 (66%), Gaps = 12/550 (2%) Query: 8 ALTATAAFQALLSHHAEVRDRHMR--DLFAADPQRFDNMTVKAAGILLDYSKNRVDHTTL 65 +LT +A+++L H+ + R RH + LFAAD +R +++T +A GI LDYSKN V T+ Sbjct: 21 SLTGKSAWRSLQEHYRD-RARHFQLARLFAADDKRGESLTAEAVGIYLDYSKNLVTSETM 79 Query: 66 KLLFELARERGVERQRAAMFSGEKINFTEHRAVLHTALRAPRGQALIVDGQHVGEDVHAV 125 LL +LAR+ G+ + AMF G++IN TE+R+VLHTALR P + L+VDGQ V +V V Sbjct: 80 ALLMQLARQCGLPDRIEAMFRGDRINLTENRSVLHTALRKPASERLVVDGQDVVAEVQQV 139 Query: 126 LDRIHSFTERVRESQWLGLSGKPITDIVNIGIGGSHLGPQMACTALRTFAHPRLTMHFVS 185 L R+ F +VR QWLG +G PI +VNIGIGGS LGP MA ALR ++H LT+HFVS Sbjct: 140 LRRMEGFARQVRSGQWLGHTGLPIRHVVNIGIGGSDLGPMMAYEALRPYSHDDLTLHFVS 199 Query: 186 NVDGHDLHDVLQRVDVETTLFIVASKTFTTQETMMNAGSARDWFLQRAAAAD-LAKHFVA 244 +VDG + D ++ + E TLFIV SKTFTT ET+ NA +AR W +Q+ A + +A+HFV Sbjct: 200 DVDGAAMLDTVRGLPAEQTLFIVCSKTFTTLETITNATAARAWLVQQLGAEEAVARHFVG 259 Query: 245 VSTNTEAVRAFGIDTDNMFPFWDWVGGRYSMWSSIGLSIALAIGFKNFSELLAGAHAMDK 304 V+TN E + FGID DNMF FWDWVGGRYSM S+IGLS +AIG ++F +L G HAMD+ Sbjct: 260 VTTNIEEAQRFGIDADNMFGFWDWVGGRYSMTSAIGLSTMVAIGPEHFRAMLEGFHAMDE 319 Query: 305 HFCEAPLERNMPIIQALIGIWNRNCFNSESLSIAPYHHDLRHFPAYLQQLEMESNGKRIT 364 HF APLE N+P+I ++ +W N F + S ++ PY L+ PAYLQQL MESNGK IT Sbjct: 320 HFRSAPLESNLPVILGMLTVWYTNFFGAASQAVLPYSQHLKRLPAYLQQLTMESNGKHIT 379 Query: 365 RDGSAVGVATCPFIWGDVGTNGQHAFFQLLHQGTDITPIDFIAVLHATHDLPGHHAVLLA 424 +G V T P WGD G NGQH+F+Q+LHQGT + P DFI + L H +L+A Sbjct: 380 VNGEPVDYQTSPVYWGDNGINGQHSFYQMLHQGTQLVPCDFIGLCQPQQALGQQHELLMA 439 Query: 425 NCFAQSEAFMRGKQAEEVRDDLKKLGVDDDEINFLLPHKTFNGNRPSNTLLLDALTPATL 484 N FAQSEA GK A++VR + G + L+PH+ F GNRPSN++LL LTP +L Sbjct: 440 NMFAQSEALAFGKDADQVRQE----GTPEA----LVPHRVFEGNRPSNSMLLQQLTPYSL 491 Query: 485 GALIALYEHKTFVQGTIWGINSFDQWGVELGKVLAKTIQSELAGEAVPARHDCSTNALIA 544 G L+ALYEH F QG +W I+SFDQWGVELGK LAK EL P HD STNALI Sbjct: 492 GTLVALYEHSVFTQGVVWNIDSFDQWGVELGKQLAKRTARELIDHQQPLHHDSSTNALIR 551 Query: 545 LAKKALSDTQ 554 + + TQ Sbjct: 552 RYRACSTATQ 561 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,672,194 Number of extensions: 69488 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 190 Number of HSP's successfully gapped: 2 Length of query: 555 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 465 Effective length of database: 1,193,720 Effective search space: 555079800 Effective search space used: 555079800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)