BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0143.0006.p
         (405 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310431|ref|YP_003774523.1| glucose-6-phosphate 1-dehydroge...   659   0.0  

>gi|300310431|ref|YP_003774523.1| glucose-6-phosphate
           1-dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 488

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/404 (79%), Positives = 350/404 (86%), Gaps = 27/404 (6%)

Query: 1   MAISDFDLVLFGGTGDLAMRKLLPALYARDRARDLMPSARIICIGRDNKSNEDFLQIVEK 60
           MAISDFDLVLFGGTGDL+MRKLLPALYARDRARDL P ARI+C+GRD K+ E+F+QIVEK
Sbjct: 1   MAISDFDLVLFGGTGDLSMRKLLPALYARDRARDLPPEARIVCLGRDEKTREEFIQIVEK 60

Query: 61  NSKPHVSSATLDADVWQRFCGRIQYVSLNAKEPATYQNLVAAMRDDPAISRVFYLATPPT 120
           +SKPHV +A LD  VW+RFC R+QY S+NAK+ A++ +L  A+RD   ++RVFYLATPP+
Sbjct: 61  DSKPHVPAANLDKAVWERFCNRLQYASVNAKDGASFVHLKEALRDTEGLARVFYLATPPS 120

Query: 121 LFSMICDNLSQAGLATANARVVLEKP--------------------------XDHYLGKE 154
           LF+ IC+NLS+ GL T  +RVVLEKP                           DHYLGKE
Sbjct: 121 LFASICENLSKGGLVTPASRVVLEKPLGRDLASARDINAQVGRYFQESQIFRIDHYLGKE 180

Query: 155 AVQNLLALRFGNVLFEPLWRREWISDVQITIAEELGVGGRFDYYDTSGALRDMLQNHLLQ 214
           AVQNLLALRFGNVLFEPLWRREWISDVQITIAEELGVGGRFDYYDTSGALRDMLQNHLLQ
Sbjct: 181 AVQNLLALRFGNVLFEPLWRREWISDVQITIAEELGVGGRFDYYDTSGALRDMLQNHLLQ 240

Query: 215 LLCIVAMEPPVSNSADSVRDEKLKVLRSLKRFTPSTLAMNVVRGQYRAGHVNGVAVPGYR 274
           LLCIVAMEPPVSNSAD+VRDEKLKVLRSLKRFTP+TLAMNVVRGQYRAGHVNGVAVPGYR
Sbjct: 241 LLCIVAMEPPVSNSADAVRDEKLKVLRSLKRFTPTTLAMNVVRGQYRAGHVNGVAVPGYR 300

Query: 275 KEEDANPDSRTETFVAVKAEIDTWRWAGVPFYLRTGKRMADSLAEIVVRFKSVPHSIFAH 334
           KE DANPDSRTET+VAVKAEIDTWRWAGVPFYLRTGKRMADSLAEIVVRFKSVPHSIFAH
Sbjct: 301 KEADANPDSRTETYVAVKAEIDTWRWAGVPFYLRTGKRMADSLAEIVVRFKSVPHSIFAH 360

Query: 335 NSRSTPNCLVIRLQPDEGLHMNLMAKTPGDGMRLKPVELELDFR 378
            +  TPNCLVIRLQPDEGLHMNLMAK PGDGMRL+PVELELDFR
Sbjct: 361 QN-DTPNCLVIRLQPDEGLHMNLMAKQPGDGMRLRPVELELDFR 403


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,297,199
Number of extensions: 52865
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 318
Effective length of database: 1,207,925
Effective search space: 384120150
Effective search space used: 384120150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)