BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0141.0015.p (143 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311884|ref|YP_003775976.1| two component response regulato... 208 2e-55 gi|300312037|ref|YP_003776129.1| sensory transduction regulatory... 86 1e-18 gi|300311809|ref|YP_003775901.1| two component response regulato... 77 6e-16 gi|300310718|ref|YP_003774810.1| phosphate regulon two-component... 55 2e-09 gi|300312512|ref|YP_003776604.1| sensory transduction regulatory... 53 8e-09 >gi|300311884|ref|YP_003775976.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 208 bits (529), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 108/143 (75%), Positives = 126/143 (88%), Gaps = 1/143 (0%) Query: 1 MEQMDIMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDSSFAARKDLHPR 60 +EQ DI+LVDDSPEVAELTR+AL S+KLADK+TWFADAE A ++ F +A R+DLHP Sbjct: 3 IEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQ-GEYAQRRDLHPY 61 Query: 61 LILLDLHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSAD 120 LILLDL+LPLMSGHDFLKIIKSNAAT+HIPVVMFSSSDDQRDI QSY+LGANGY++KS D Sbjct: 62 LILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTD 121 Query: 121 PREFIGTVVDAGMYWVNRNKAVR 143 P+EF+GTVVD G+YW NRN+ R Sbjct: 122 PKEFMGTVVDTGIYWRNRNRPAR 144 >gi|300312037|ref|YP_003776129.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 140 Score = 86.3 bits (212), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/136 (40%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Query: 1 MEQMDIMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDSSFAARKDLHPR 60 M + I++VD SPE EL R L KL WF DAE AA +F+ + A DL P Sbjct: 1 MSRPSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADL-PC 59 Query: 61 LILLDLHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSAD 120 LILL+ LP M G + L +++++A T +PVVMF++S D D ++ GAN YL+K D Sbjct: 60 LILLEPRLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVD 119 Query: 121 PREFIGTVVDAGMYWV 136 R F+ V W+ Sbjct: 120 ARAFMELVSQTVRRWL 135 >gi|300311809|ref|YP_003775901.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 76.6 bits (187), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 74/134 (55%), Gaps = 2/134 (1%) Query: 2 EQMDIMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDSSFAARKDLHPRL 61 + ++I+LV+D A L L L + D +EA DY+F +R +L + Sbjct: 5 QSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQR--SRTELQQLV 62 Query: 62 ILLDLHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSADP 121 +LLD+++P ++G + L+ +K++ + IPV+M +++DD R+I + Y+ G N Y+ K + Sbjct: 63 VLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPVEY 122 Query: 122 REFIGTVVDAGMYW 135 +FI + G + Sbjct: 123 EDFIEAIRRLGFFL 136 >gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 55.1 bits (131), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 11/123 (8%) Query: 6 IMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDSSFAARKDLHPRLILLD 65 I++V+D P +AEL R + A T D +A ++ P ++LLD Sbjct: 8 ILMVEDEPSIAELLRFTMQGAGFA--TTIATDVAQARKHIAESL---------PHVVLLD 56 Query: 66 LHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSADPREFI 125 LP SG L ++ + TA +PV+M ++ + D V+ GA+ Y+ K P+E + Sbjct: 57 WMLPDSSGLVLLNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELV 116 Query: 126 GTV 128 V Sbjct: 117 ARV 119 >gi|300312512|ref|YP_003776604.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 53.1 bits (126), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 2/126 (1%) Query: 6 IMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDSSFAARKDLHPRLILLD 65 I++++ + E EL R AL + W+ +A+ A D + + P LILLD Sbjct: 6 ILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDAR--LPDLILLD 63 Query: 66 LHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSADPREFI 125 + +G DF+ +K+ T IPVV+F SD ++ + GA+ YL+K +++ Sbjct: 64 PGMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAPQYM 123 Query: 126 GTVVDA 131 VV+ Sbjct: 124 QAVVEC 129 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 350,456 Number of extensions: 10470 Number of successful extensions: 108 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 5 Length of query: 143 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 66 Effective length of database: 1,255,275 Effective search space: 82848150 Effective search space used: 82848150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)