BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0141.0014.p (237 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311883|ref|YP_003775975.1| cyclic nucleotide-binding prote... 418 e-118 gi|300313985|ref|YP_003778077.1| cyclic nucleotide-binding prote... 204 7e-54 >gi|300311883|ref|YP_003775975.1| cyclic nucleotide-binding protein [Herbaspirillum seropedicae SmR1] Length = 225 Score = 418 bits (1074), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/222 (90%), Positives = 211/222 (95%) Query: 14 KTSIKDMLGKSIWARSLTGEQLARVQAEVFSRKIPAGGFVCHKGDPVSHWIGVHEGLLKM 73 +TSI+ ML KSIWA++LT EQLARV+ EV SRKIPAGG+VC KGD V+HWIGVHEGLLKM Sbjct: 2 ETSIRRMLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLKM 61 Query: 74 SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWLLDNSI 133 SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALR+SELLYMPKATY+WLLDNSI Sbjct: 62 SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNSI 121 Query: 134 PFNRFLVTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLELQISQEEV 193 PFNRFLVTQLNERL LFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGL LQISQEEV Sbjct: 122 PFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEV 181 Query: 194 GNLSGASRQRANQALQVLEKAGLLKVDYGSITILDLEGLRQF 235 GNLSG SRQRANQALQVLEKAGLLKVDYGSITI DLEGLRQF Sbjct: 182 GNLSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 223 >gi|300313985|ref|YP_003778077.1| cyclic nucleotide-binding protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 204 bits (518), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 96/219 (43%), Positives = 149/219 (68%) Query: 17 IKDMLGKSIWARSLTGEQLARVQAEVFSRKIPAGGFVCHKGDPVSHWIGVHEGLLKMSSV 76 + +L + W +L E A A + A FV +G+ +WIGVHEGL+K++ Sbjct: 1 MAQLLQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVY 60 Query: 77 SPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWLLDNSIPFN 136 + +G++ + +G+ GGW GEGS++K EPR+YDV+A+R S++L +P T+ L+ S+PFN Sbjct: 61 NIDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRASQILLVPADTFHCLMAESLPFN 120 Query: 137 RFLVTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLELQISQEEVGNL 196 F++ QLNER+G FI+ V+ +R+L+ DARVA+ +A LF+P L P L++SQEE+G L Sbjct: 121 AFVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLL 180 Query: 197 SGASRQRANQALQVLEKAGLLKVDYGSITILDLEGLRQF 235 +G SRQR NQA++ L + GL+++ Y SI ++DL+GLR F Sbjct: 181 TGLSRQRVNQAMRRLAELGLVEISYQSIRVVDLDGLRAF 219 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 739,401 Number of extensions: 31230 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 2 Length of query: 237 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 155 Effective length of database: 1,231,600 Effective search space: 190898000 Effective search space used: 190898000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)