BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0141.0012.p (206 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPa... 323 8e-90 gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC t... 169 2e-43 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 130 6e-32 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 130 7e-32 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 127 5e-31 >gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 293 Score = 323 bits (827), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 158/204 (77%), Positives = 173/204 (84%), Gaps = 5/204 (2%) Query: 2 TTMKRHITEEV-----QPMEQEREVATGENDGARKIGEVILDLQNISLSFGGVKALTDIS 56 TTMKRH++ E+ P+ + A R+IGEVILDLQNISLSFGGVKALTDIS Sbjct: 3 TTMKRHLSSEILPSGLPPVASPDDEAPAVAANGRRIGEVILDLQNISLSFGGVKALTDIS 62 Query: 57 FNVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGNIVFRGEQRHSMHPSKVARQGIART 116 F+VREHEIRAIIGPNGAGKSSMINVINGVYHPQKG I++RG+ R MHPS +ARQGIART Sbjct: 63 FDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGRILYRGQPRAGMHPSAIARQGIART 122 Query: 117 FQNIALFKGMTVLDNIMTGRNTKMHSSFLANAIWWGSARKEEILHRHKVEEVIDFLEIQH 176 FQNIALFKGMTVLDNIMTGRNTKM S L+NA+WWG+AR EEI HR KVE+VIDFLEIQH Sbjct: 123 FQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAARNEEIEHRRKVEQVIDFLEIQH 182 Query: 177 IRKTPVGRLPYGLQKRVELARAXA 200 IRKTPVGRLPYGLQKRVELARA A Sbjct: 183 IRKTPVGRLPYGLQKRVELARALA 206 >gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 169 bits (427), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 80/163 (49%), Positives = 115/163 (70%) Query: 36 ILDLQNISLSFGGVKALTDISFNVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGNIVF 95 +L L+ +SLSFGGV+AL + + E EI A+IGPNGAGKSS++NV++G+Y P +G + Sbjct: 8 VLQLEGVSLSFGGVQALRHVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPTQGTVSL 67 Query: 96 RGEQRHSMHPSKVARQGIARTFQNIALFKGMTVLDNIMTGRNTKMHSSFLANAIWWGSAR 155 G + + +++ R G+ARTFQN+ALFKG++V DNI+ GR M +SF+ I G AR Sbjct: 68 GGRRLRQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQIIGLGRAR 127 Query: 156 KEEILHRHKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARA 198 +E I R + E+++ FL+++ + VG LPYGLQKRVELARA Sbjct: 128 RERIDARAQAEQMMAFLDLRAYAERQVGGLPYGLQKRVELARA 170 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 130 bits (328), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 65/169 (38%), Positives = 99/169 (58%) Query: 32 IGEVILDLQNISLSFGGVKALTDISFNVREHEIRAIIGPNGAGKSSMINVINGVYHPQKG 91 + + +L ++++S FGG++AL + + +I +IGPNGAGK++ NVI G+Y P G Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 92 NIVFRGEQRHSMHPSKVARQGIARTFQNIALFKGMTVLDNIMTGRNTKMHSSFLANAIWW 151 G+ P +VA+ GIARTFQNI LF MTVL+N+M G + + + Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRH 120 Query: 152 GSARKEEILHRHKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARAXA 200 +AR+EE R K ++++DF+ I K L YG Q+R+E+ARA A Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALA 169 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 130 bits (327), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 65/169 (38%), Positives = 99/169 (58%) Query: 32 IGEVILDLQNISLSFGGVKALTDISFNVREHEIRAIIGPNGAGKSSMINVINGVYHPQKG 91 + + +L ++++S FGG++AL + + +I +IGPNGAGK++ NVI G+Y P G Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 92 NIVFRGEQRHSMHPSKVARQGIARTFQNIALFKGMTVLDNIMTGRNTKMHSSFLANAIWW 151 G+ P +VA+ GIARTFQNI LF MTVL+N+M G + + + Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH 120 Query: 152 GSARKEEILHRHKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARAXA 200 +AR+EE R K ++++DF+ I K L YG Q+R+E+ARA A Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALA 169 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 127 bits (320), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 102/165 (61%) Query: 34 EVILDLQNISLSFGGVKALTDISFNVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGNI 93 + +L++ N+S+ FGG+ A+ +S V+E E+ AIIGPNGAGK+++ N I+G Y P G I Sbjct: 6 KTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEI 65 Query: 94 VFRGEQRHSMHPSKVARQGIARTFQNIALFKGMTVLDNIMTGRNTKMHSSFLANAIWWGS 153 + G +VA+QG+ RTFQNI LFK MTV++N++ ++ +++++ L+ + + Sbjct: 66 MLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPA 125 Query: 154 ARKEEILHRHKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARA 198 RK E + +D L + + G L YGLQ+RVE+AR Sbjct: 126 YRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARC 170 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 572,949 Number of extensions: 22110 Number of successful extensions: 272 Number of sequences better than 1.0e-08: 73 Number of HSP's gapped: 260 Number of HSP's successfully gapped: 73 Length of query: 206 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 125 Effective length of database: 1,236,335 Effective search space: 154541875 Effective search space used: 154541875 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)