BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0141.0007.p (333 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPa... 487 e-139 gi|300310290|ref|YP_003774382.1| branched-chain amino acid ABC t... 255 4e-69 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 222 3e-59 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 195 4e-51 gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 195 5e-51 >gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 288 Score = 487 bits (1254), Expect = e-139, Method: Compositional matrix adjust. Identities = 241/259 (93%), Positives = 246/259 (94%), Gaps = 4/259 (1%) Query: 4 ALNINNIEVIYDHVILVLKGVSLAVPEGKIVALLGANGAGKSTTLKAISNLLGAERGDVT 63 AL INNIEVIYDHVILVLKGVSL VPEGKIVALLGANGAGKSTTLKAISNLL AERGDVT Sbjct: 25 ALAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANGAGKSTTLKAISNLLHAERGDVT 84 Query: 64 KGSIEFKGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTIEENLLTGAYTRNISNAEVKQE 123 KGSIEF+GERVDRMTPNDLVKRGVIQVMEGRHCFGHLT+EENLLTGAYTR ISNAEVK E Sbjct: 85 KGSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISNAEVKHE 144 Query: 124 LEKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEI 183 LEKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEI Sbjct: 145 LEKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEI 204 Query: 184 FEIVKDLNTKENVSFLLAEQNTMVALRYADFGYILENGRVVMEGAANDLASNEDVKEFYL 243 FEIVKDLN+KE VSFLLAEQNTMVALRYADFGYILENGRVVMEGAA++LA NEDVKEFYL Sbjct: 205 FEIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYL 264 Query: 244 GVSAAGRKNFRK----RRR 258 GVS AGRKNFR RRR Sbjct: 265 GVSGAGRKNFRDMKFYRRR 283 >gi|300310290|ref|YP_003774382.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 255 bits (651), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 168/240 (70%) Query: 5 LNINNIEVIYDHVILVLKGVSLAVPEGKIVALLGANGAGKSTTLKAISNLLGAERGDVTK 64 L I IEV Y +L L+ VSL V G+I ALLGANGAGKSTTLKA+SNLL A+RG V Sbjct: 6 LQIEAIEVRYQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAVSNLLAAQRGQVRA 65 Query: 65 GSIEFKGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTIEENLLTGAYTRNISNAEVKQEL 124 G I ++G V R +P +LV++G+ QV+EGRHCF LT+EENLLTG ++ L Sbjct: 66 GHILYEGREVGRSSPAELVRQGLAQVLEGRHCFASLTVEENLLTGWPAHFTRRTVLRAAL 125 Query: 125 EKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIF 184 E+IY +FP+L RR+S +G SGGEQQM AIGRA++++P +++LDEPSMGLAP++V +IF Sbjct: 126 ERIYAFFPQLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKVVADIF 185 Query: 185 EIVKDLNTKENVSFLLAEQNTMVALRYADFGYILENGRVVMEGAANDLASNEDVKEFYLG 244 + LN +E V+ L+AEQN+ VAL+YA +LE+GR V+ A L D++ FY G Sbjct: 186 AQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGRSVLSDEAQALRQRADIQSFYFG 245 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 222 bits (566), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 122/240 (50%), Positives = 164/240 (68%), Gaps = 8/240 (3%) Query: 5 LNINNIEVIYDHVILVLKGVSLAVPEGKIVALLGANGAGKSTTLKAISNLLGAERGDVTK 64 L + ++ V Y H+ V KG+SL++ EG+I AL+GANGAGKST+L AIS L+ A+RG V Sbjct: 11 LQVEDLAVAYGHIEAV-KGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVL- 68 Query: 65 GSIEFKGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTIEENLLTGAYTRNISNAEVKQEL 124 G+ + +M+P+ +V+ GV+QV EGR LT+EENL GAYTR + V ++L Sbjct: 69 ----LHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDG-VARDL 123 Query: 125 EKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIF 184 E +Y FP LK R +G SGGEQQM AIGRA+MAKP ++LLDEPSMGLAP I++EIF Sbjct: 124 EWVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIF 183 Query: 185 EIVKDLNTKENVSFLLAEQNTMVALRYADFGYILENGRVVMEGAANDLASNEDVKEFYLG 244 IV+++N K ++ LL EQN ALR A GY+LE G++V+E + +L N V E YLG Sbjct: 184 RIVQEIN-KTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 195 bits (496), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 104/243 (42%), Positives = 156/243 (64%), Gaps = 10/243 (4%) Query: 5 LNINNIEVIYDHVILVLKGVSLAVPEGKIVALLGANGAGKSTTLKAISNLLGAERGDVTK 64 L I+N+ Y V VL G+S+ VP+GK+V L+G+NGAGK+TT++AIS ++ + G+VT Sbjct: 2 LTISNLHAAYGKV-EVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 Query: 65 GSIEFKGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTIEENLLTGAY---TRNISNAEVK 121 G G+ + + + + + G+ EGR F +++ +NLL GA+ TR ++ Sbjct: 61 G-----GKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIA 115 Query: 122 QELEKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVE 181 +LE+ + FPRLK R+ +G SGGEQQM A+ RA+M P +ILLDEPSMGLAP +V+ Sbjct: 116 HDLERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVD 175 Query: 182 EIFEIVKDLNTKENVSFLLAEQNTMVALRYADFGYILENGRVVMEGAANDLASNEDVKEF 241 E+F I+ L ++ V+ LL EQ AL AD+GY+LENG++ + G A+ L ++ VK Sbjct: 176 EVFRIIVRLK-EQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAA 234 Query: 242 YLG 244 YLG Sbjct: 235 YLG 237 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 195 bits (495), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 110/245 (44%), Positives = 154/245 (62%), Gaps = 13/245 (5%) Query: 5 LNINNIEVIYDHVILVLKGVSLAVPEGKIVALLGANGAGKSTTLKAISNLLGAERGDVTK 64 L + ++ Y V VL G+ L+V +GKIV ++G NGAGK+T L AI +L ++ Sbjct: 6 LEVRDLSAAYGKV-EVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLP------SR 58 Query: 65 GSIEFKGERVDRMTPN--DLVKRGVIQVMEGRHCFGHLTIEENLLTGAYTR-NISNAEVK 121 G++ F G R +P ++V G+ V E R F + IE+NL+ GA+ R + Sbjct: 59 GAMAFDG--AIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHA 116 Query: 122 QELEKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVE 181 LE++Y FPRL+ RR Q+G SGGE+QM A+GRA+MAKP +++LDEPS+GLAP IV Sbjct: 117 ATLEEVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVR 176 Query: 182 EIFEIVKDLNTKENVSFLLAEQNTMVALRYADFGYILENGRVVMEGAANDLASNEDVKEF 241 EIF I+ +L + VS LL EQN AL+ AD+GY+LENG + M G A+ LA + V E Sbjct: 177 EIFRIIAELR-RRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEA 235 Query: 242 YLGVS 246 YLG+S Sbjct: 236 YLGLS 240 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 958,230 Number of extensions: 37759 Number of successful extensions: 513 Number of sequences better than 1.0e-08: 114 Number of HSP's gapped: 346 Number of HSP's successfully gapped: 122 Length of query: 333 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 247 Effective length of database: 1,212,660 Effective search space: 299527020 Effective search space used: 299527020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)