BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0141.0006.p
         (260 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311876|ref|YP_003775968.1| phenylacetyl-CoA-ligase [Herbas...   296   9e-82
gi|300313420|ref|YP_003777512.1| phenylacetyl-CoA-ligase [Herbas...    79   5e-16

>gi|300311876|ref|YP_003775968.1| phenylacetyl-CoA-ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 423

 Score =  296 bits (759), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 143/170 (84%), Positives = 157/170 (92%)

Query: 1   MAEGAAAKLGCAVIPSGIGQTELQVQTMAALRPDAYVGTPSFLKIIIEKAQEMGVALDSL 60
           M EGAAA+LGCAVIP+GIGQTELQV  MAAL+PDAYVGTPSFLKIIIEKAQEMG  + S+
Sbjct: 145 MVEGAAARLGCAVIPAGIGQTELQVNAMAALKPDAYVGTPSFLKIIIEKAQEMGADISSV 204

Query: 61  QRALVSAEALPPSLRSWFHDNGVPNVLQLYASADIGNIAYESISEGKVNPGMILDEDLIL 120
           QRALVSAEALPPSLR+WFH++GVP VLQLYASADIGNIAYE++SEG V+PGM+LDE LIL
Sbjct: 205 QRALVSAEALPPSLRNWFHEHGVPQVLQLYASADIGNIAYETMSEGAVHPGMVLDEALIL 264

Query: 121 EIVRPGTGDPVKPGEVGEVVVTSFNPDYPLIRFGTGDLTAALDGVSPCGR 170
           EIVRPGTGDPV  GEVGEVVVTSFNPDYPLIRFGTGDL+A + GVSPCGR
Sbjct: 265 EIVRPGTGDPVAAGEVGEVVVTSFNPDYPLIRFGTGDLSAVVPGVSPCGR 314


>gi|300313420|ref|YP_003777512.1| phenylacetyl-CoA-ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score = 78.6 bits (192), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 13/199 (6%)

Query: 2   AEGAAAKLGCAVIPSGIGQTELQVQTMAALRPDAYVGTPSFLKIIIEKAQEMGV--ALDS 59
           A   A KLGC VIP   GQTE QVQ +   +P   + TPS++  +IE+ Q  G+  A  S
Sbjct: 151 AHYGAEKLGCTVIPMSGGQTEKQVQLIRDFKPSIIMVTPSYMLNVIEEFQRQGMDPASSS 210

Query: 60  LQRALVSAEALPPSLRSWFHDNGVPNVLQLYASADIG--NIAYESISEGKVNPGMILDED 117
           L+  +  AE    ++R         + + +Y  +++    +A E I E K  P +I ++ 
Sbjct: 211 LKVGIFGAEPWTDAMRREIQQRAGLDAVDIYGLSEVMGPGVASECI-ESKDGP-VIWEDH 268

Query: 118 LILEIVRPGTGDPVKPGEVGEVVVTSFNPD-YPLIRFGTGDLTAALDGVSPCGRXLFAQA 176
              EI+ P TG+ +  G  GE+V TS + +  P+IR+ T DLT  L    P  R +    
Sbjct: 269 FYPEIIDPDTGEVLPDGVEGELVFTSLSKEALPMIRYRTRDLTRLL---PPTSRSMRRIG 325

Query: 177 RMIARTAQISIF---SAFP 192
           ++  R+  + I    + FP
Sbjct: 326 KITGRSDDMLIIRGVNVFP 344


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 806,389
Number of extensions: 31788
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,226,865
Effective search space: 217155105
Effective search space used: 217155105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)