BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0141.0005.p (646 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans isome... 880 0.0 gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isome... 87 6e-18 gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl c... 67 3e-12 >gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans isomerase D [Herbaspirillum seropedicae SmR1] Length = 639 Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/630 (71%), Positives = 529/630 (83%), Gaps = 2/630 (0%) Query: 1 MFEFIRNHQRLMQFLLLLFIFPSFAFFGLEGYSRLSDGDNAVAKVAGQTITKEEWDAAQR 60 MF+FIR HQRLMQFLLLLFIFPSFAFFGLEGYSRL+D DN VAKVAGQTITKEEWDAA R Sbjct: 1 MFDFIRTHQRLMQFLLLLFIFPSFAFFGLEGYSRLTD-DNGVAKVAGQTITKEEWDAAHR 59 Query: 61 QQLERMRQMSGGQIDPKVFDTPEARRAVLDNLIAQRALTAEVVNDKLSVSDLALQQSIMQ 120 QQLERMRQ+ G Q D K+FD+P+ARRA+LDNLIAQRAL AEVV KL V D LQQSI+Q Sbjct: 60 QQLERMRQVYGNQFDSKIFDSPQARRAILDNLIAQRALGAEVVASKLVVPDQVLQQSILQ 119 Query: 121 IPGLLKADGSFDSDQYRVLLAAQGLTPKGYEASLRRDMGLQQLNAAVQGTAFAPKTVAAR 180 IPGL KADG FD++QYRVLLAAQG+TPK YEA LRR+M +QQLNAA+Q TAFAPKTVA Sbjct: 120 IPGLTKADGKFDNEQYRVLLAAQGMTPKSYEAGLRREMAVQQLNAAIQTTAFAPKTVAEN 179 Query: 181 LSDLNDQERTVQELTFKAASFAGQVKVTDDMLKAYYDKNGSKFEVPEQAKIEYVVLDSAA 240 LS LNDQERTVQ L FK S+A QVK++D+MLK YYDKN ++FE PEQA IEYVVLD+AA Sbjct: 180 LSALNDQERTVQMLNFKPDSYASQVKLSDEMLKDYYDKNSARFETPEQADIEYVVLDAAA 239 Query: 241 VAAQVSVSDADVKSYYDQNIKQYSTDEQRRASHILLEVKKGASAADKAAVKAKADELVAQ 300 VAAQ +V+D D+K+YY+QN K Y+T+EQRRASHIL+ VKK ASAAD+AA K+KA+ LVAQ Sbjct: 240 VAAQAAVTDDDIKAYYEQNKKLYATEEQRRASHILIAVKKDASAADQAAAKSKAEGLVAQ 299 Query: 301 LRKTPGDFAKLAKANSQDPGSKDQGGDLGFFGKGAMLKSFEDAAYKLKQGEISDPVESDY 360 LRK PG+FAKLAKANSQDPGS + GGDLG+FGKGAM+K FEDAA+ LKQGEISDPV+SD+ Sbjct: 300 LRKNPGEFAKLAKANSQDPGSAENGGDLGYFGKGAMVKPFEDAAFSLKQGEISDPVQSDF 359 Query: 361 GYHIIQLTGVKPGSVKPLDEVKGEISTEIKKQLAAKKYAELAETFNNTVYEQGDSLKPVA 420 GYHII++TG+KP +VKPL+ VK EI +EIKKQ+AAKKY+E+A+ FNN VYE GDSLK V+ Sbjct: 360 GYHIIEVTGIKPAAVKPLESVKAEIGSEIKKQIAAKKYSEMADQFNNLVYENGDSLKAVS 419 Query: 421 DKLKLKIETATGVTRQANPTLAPNTVYNNPKFLKALFTDDTIKGKHNSEAVQVAPTTLIA 480 DKLKLKI+TATGVTR NP P YNN KFL ALFTDD IK KHN+EAVQ AP TL+A Sbjct: 420 DKLKLKIQTATGVTRTPNPAAGP-LPYNNAKFLTALFTDDVIKAKHNTEAVQTAPNTLVA 478 Query: 481 GHIVEYKPVTKRAFDDVKTIVRELVTQTEELALAKKAGEAKLAELKSKDDATGFGEAKLA 540 G + YKPVTKR FD+VK V++ V +E LA KAG+ +LA+L++KDDA GF EAK+ Sbjct: 479 GRVTSYKPVTKRPFDEVKADVQKAVLAQQEQLLAVKAGQERLAQLQAKDDAAGFSEAKVV 538 Query: 541 SRVKTQGWNQDAFLAVMKADTAKLPAYTGVEVPGQGYSVFRITKVAQPAAPDAARRKTEQ 600 SRVK GW Q+AF AVMKADTAKLPAY G E PG GY ++RI+KV QP DAARR+ E+ Sbjct: 539 SRVKADGWTQEAFNAVMKADTAKLPAYVGAETPGMGYQIYRISKVEQPKTVDAARRQAER 598 Query: 601 DQIANTLAEQEMLSYINFLKEKAKTKILKG 630 +QIA+ L++QE LSY+++L+EKAKTK+LKG Sbjct: 599 EQIASALSQQEALSYLDYLREKAKTKLLKG 628 >gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isomerase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 87/147 (59%), Gaps = 16/147 (10%) Query: 247 VSDADVKSYYDQNIKQYSTDEQRRASHILLEVKKGASAADKAAVKAKADELVAQLRKTPG 306 VSDAD+K+ YD+ K + D++ A HIL++ K+ A A ++A+L K Sbjct: 111 VSDADIKAEYDK-FKAQAGDKEYHARHILVDKKEDAEA------------IIAKL-KAGT 156 Query: 307 DFAKLAKANSQDPGSKDQGGDLGFFGKGAMLKSFEDAAYKLKQGEIS-DPVESDYGYHII 365 F LAK S+D GS GGDL + + +K F DA LK+GE++ PV++ +G+H+I Sbjct: 157 KFEDLAK-QSKDTGSAANGGDLDWATPASFVKPFSDAMVALKKGEVTPTPVQTQFGWHVI 215 Query: 366 QLTGVKPGSVKPLDEVKGEISTEIKKQ 392 +L V+P V LDEVK +I+ ++++ Sbjct: 216 KLEDVRPAKVPTLDEVKPQIAEALQQK 242 >gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl cis-trans isomerase [Herbaspirillum seropedicae SmR1] Length = 496 Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 4/96 (4%) Query: 273 HILLEVKKGASAADKAAVKAKADELVAQLRKTPGDFAKLAKANSQDPGSKDQGGDLGFFG 332 HIL++V + +AA+ K K EL +L F +LAK S D S +GGDLG+ Sbjct: 357 HILIKVNQVVTAAE---AKRKLTELKERLDHGSATFEELAKLYSNDL-SASKGGDLGWVY 412 Query: 333 KGAMLKSFEDAAYKLKQGEISDPVESDYGYHIIQLT 368 G + FE A +LK GE+S P+E+ +GYH+IQ+ Sbjct: 413 PGDTVPEFERAMDQLKPGEVSQPIETPFGYHLIQVV 448 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.129 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,715,582 Number of extensions: 63659 Number of successful extensions: 217 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 211 Number of HSP's successfully gapped: 4 Length of query: 646 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 555 Effective length of database: 1,188,985 Effective search space: 659886675 Effective search space used: 659886675 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 134 (56.2 bits)