BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0141.0003.p
         (123 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311550|ref|YP_003775642.1| glutamine amidotransferase [Her...   128   1e-31

>gi|300311550|ref|YP_003775642.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score =  128 bits (321), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 75/105 (71%)

Query: 10  EHLLHEIPESFEAHMLHSQVVLEPPPGATVLASSTMDPHHMLRLAPNIFSAQFHPEFTGE 69
           + LL  +P  F AHMLH Q VL PPP A V+A S MDPHH+++   N++S QFHPEF+ E
Sbjct: 133 DELLGVLPPEFPAHMLHMQSVLRPPPDAIVMARSPMDPHHVIKHKHNVYSTQFHPEFSPE 192

Query: 70  FVKAHLAYYTEIYGKCGIDTAAMRARVCETPQSASLLRRFLDLHA 114
           FV+AHL YY +IY  CGID  A+  +V +TPQS  LLRRFL LHA
Sbjct: 193 FVRAHLHYYADIYRGCGIDAQALCEKVSDTPQSTGLLRRFLALHA 237


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 397,771
Number of extensions: 14223
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 49
Effective length of database: 1,269,480
Effective search space: 62204520
Effective search space used: 62204520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)