BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0141.0002.p
         (215 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311551|ref|YP_003775643.1| acyl-CoA thioesterase I protein...   282   2e-77

>gi|300311551|ref|YP_003775643.1| acyl-CoA thioesterase I protein
           [Herbaspirillum seropedicae SmR1]
          Length = 225

 Score =  282 bits (721), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/212 (67%), Positives = 170/212 (80%), Gaps = 7/212 (3%)

Query: 6   RHDVR---WRRLLAALLAMPLLMLAASAYSAPKTLLVLGDSLSAEYGLTRGSGWVALLDK 62
           RH V    WR LLA +    L++ A SAYSAPKTLLVLGDSLSAEYGL RG+GW ALL +
Sbjct: 15  RHTVAMWLWR-LLAGV---ALVLAATSAYSAPKTLLVLGDSLSAEYGLERGTGWTALLQQ 70

Query: 63  RLQQEKINTGVINASISGETTIGGKTRLPALLSKHAPDVVIIELGANDALRGLQLSATQA 122
           RLQQ K+ T V+NASISG+TTIGGK RLPAL+S+H PDV++IELG+NDALRGL L  +Q 
Sbjct: 71  RLQQHKLATTVVNASISGDTTIGGKNRLPALMSQHKPDVLVIELGSNDALRGLPLKTSQD 130

Query: 123 NLQALIDMARAAKAKVVLVGMQIPPNYGADYTDKFSQLFPAAAKQNKTALVPFFLKDVAD 182
           NLQA+I +AR  +AKV+LVGMQIPPNYG DYT +FS ++   AK NK ALVPFF++ +A 
Sbjct: 131 NLQAMITLARQQQAKVLLVGMQIPPNYGPDYTRRFSAMYQDLAKSNKVALVPFFMEGIAA 190

Query: 183 KPALFQADRMHPNEQAQQTLLDNVWPALRPLL 214
             +LFQADR+HPNEQAQ  LLDNVWPAL+PLL
Sbjct: 191 DLSLFQADRIHPNEQAQPRLLDNVWPALKPLL 222


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 583,581
Number of extensions: 20780
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 134
Effective length of database: 1,236,335
Effective search space: 165668890
Effective search space used: 165668890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)