BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0140.0010.p
         (223 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313265|ref|YP_003777357.1| pyruvate dehydrogenase E1 compo...   286   7e-79
gi|300310785|ref|YP_003774877.1| pyruvate dehydrogenase E1 compo...   192   1e-50

>gi|300313265|ref|YP_003777357.1| pyruvate dehydrogenase E1
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 893

 Score =  286 bits (733), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 140/167 (83%), Positives = 153/167 (91%), Gaps = 3/167 (1%)

Query: 1   MPRRVANADGKAQLRVPAIETHARFALDAEGKEMSSTMALVRMLGSMLKDADLGRYVVPI 60
           +PRR A   G+A+  VP +  H++FAL+A+GKEMSSTMALVR LG++LKD D G+YVVPI
Sbjct: 476 LPRRQA---GQARRAVPPLAAHSKFALEADGKEMSSTMALVRQLGNLLKDKDFGQYVVPI 532

Query: 61  VADEARTFGMANLFRQVGIYSSQGQLYEPEDIGSILSYREARDGQILEEGITEAGAISSW 120
           VADEARTFGMANLFRQVGIYSSQGQLYEPEDIGSIL YREA+DGQILEEGITEAGAISSW
Sbjct: 533 VADEARTFGMANLFRQVGIYSSQGQLYEPEDIGSILYYREAKDGQILEEGITEAGAISSW 592

Query: 121 TAAATSYSVHGLPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIG 167
           TAAAT+YSVHG PMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIG
Sbjct: 593 TAAATAYSVHGTPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIG 639


>gi|300310785|ref|YP_003774877.1| pyruvate dehydrogenase E1
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 898

 Score =  192 bits (489), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 98/168 (58%), Positives = 120/168 (71%), Gaps = 3/168 (1%)

Query: 1   MPRRVANADGKAQLRVPAIET-HARFALDAEGKEMSSTMALVRMLGSMLKDADLGRYVVP 59
           +P+R   AD K  L VP +    A     AEG+E+S+T A  R+L ++L+D +LG  VVP
Sbjct: 469 LPQRRVQADEK--LPVPELSAFQAMLEPTAEGREISTTAAYSRVLTALLRDPNLGPRVVP 526

Query: 60  IVADEARTFGMANLFRQVGIYSSQGQLYEPEDIGSILSYREARDGQILEEGITEAGAISS 119
           I+ DE+RTFGM  LFRQ+GI+S  GQLYEP D   ++ YRE + GQIL+EGI EAG +SS
Sbjct: 527 IMVDESRTFGMEGLFRQIGIFSQVGQLYEPVDKDQVMYYREDKAGQILQEGINEAGGMSS 586

Query: 120 WTAAATSYSVHGLPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIG 167
           W AAATSYS +   M+PFY YYSMFG QRIGDL WAA D RARGFLIG
Sbjct: 587 WIAAATSYSTNNRVMIPFYTYYSMFGLQRIGDLAWAAGDMRARGFLIG 634


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 622,101
Number of extensions: 22551
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 2
Length of query: 223
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,231,600
Effective search space: 173655600
Effective search space used: 173655600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)