BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0140.0008.p
         (167 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309828|ref|YP_003773920.1| bacitracin resistance undecapre...   301   2e-83
gi|300309829|ref|YP_003773921.1| bacitracin resistance undecapre...    68   4e-13

>gi|300309828|ref|YP_003773920.1| bacitracin resistance undecaprenol
           kinase 2 [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score =  301 bits (771), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 146/164 (89%), Positives = 158/164 (96%)

Query: 4   AIAFIVGGLVILWVERRNKGRMGYSSSRIDSVDDMTPLDAFKVGCAQAFALIPGTSRSGA 63
           AIAFIVGGL+ILWVERRNK RM  +S+R+++VDDMTPLDA KVG AQAFALIPGTSRSGA
Sbjct: 121 AIAFIVGGLIILWVERRNKDRMSMASARVETVDDMTPLDALKVGIAQAFALIPGTSRSGA 180

Query: 64  TIIGGMLFGLSRKAATEFSFFLAIPTLFAATIYSLYKERALLSAADVPLFTVGTVAAFVS 123
           TIIGGM+FGLSRKAATEFSFFLAIPTLFAATIYSLYKERALLSAADVPLFTVGTVAAFVS
Sbjct: 181 TIIGGMMFGLSRKAATEFSFFLAIPTLFAATIYSLYKERALLSAADVPLFTVGTVAAFVS 240

Query: 124 AFLCVRWLLRYISSHDFTVFAWYRILFGLVILGTAYTGVVAWVE 167
           AFLCVRWLLRYISSHDFT+FAWYRI+FG+++L TAYTGVVAWVE
Sbjct: 241 AFLCVRWLLRYISSHDFTIFAWYRIIFGIIVLVTAYTGVVAWVE 284


>gi|300309829|ref|YP_003773921.1| bacitracin resistance undecaprenol
           kinase 2 [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score = 67.8 bits (164), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 64/127 (50%), Gaps = 9/127 (7%)

Query: 34  SVDDMTPLDAFKVGCAQAFALIPGTSRSGATIIGGMLFGLSRKAATEFSFFLAIPTLFAA 93
           SVD M   DA  VG AQ  ALIPG SRSG+T+   +     R+ A  FSF L +P +  A
Sbjct: 159 SVDQMRLRDALIVGLAQVGALIPGVSRSGSTLTAALFLNFRREEAARFSFLLGLPAIALA 218

Query: 94  TIYSLYKERALLSAADVPL-----FTVGTVAAFVSAFLCVRWLLRYISSHDFTVFAWYRI 148
            +    KE A+L  A +PL        G + A VSAF  +  L++++       F  YR 
Sbjct: 219 GL----KELAVLLHAHIPLEAWGVLLFGLLVASVSAFAAIWGLMKFLERFSTWPFIVYRA 274

Query: 149 LFGLVIL 155
           + G  +L
Sbjct: 275 VLGAFLL 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.141    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 527,492
Number of extensions: 19262
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 167
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,245,805
Effective search space: 109630840
Effective search space used: 109630840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)