BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0140.0006.p
         (126 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309829|ref|YP_003773921.1| bacitracin resistance undecapre...   217   2e-58
gi|300309828|ref|YP_003773920.1| bacitracin resistance undecapre...    67   3e-13

>gi|300309829|ref|YP_003773921.1| bacitracin resistance undecaprenol
           kinase 2 [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score =  217 bits (552), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/126 (88%), Positives = 121/126 (96%)

Query: 1   LRDALIVGIAQVGALIPGVSRSGSTLTAALFLNFKREEAARFSFLLGLPAIALAGLKELA 60
           LRDALIVG+AQVGALIPGVSRSGSTLTAALFLNF+REEAARFSFLLGLPAIALAGLKELA
Sbjct: 165 LRDALIVGLAQVGALIPGVSRSGSTLTAALFLNFRREEAARFSFLLGLPAIALAGLKELA 224

Query: 61  VLLHAQIPLQAWSLLLFGIVVASLSAFCAIWGLMKFLERFSTWPFIVYRAALGAFLLVAV 120
           VLLHA IPL+AW +LLFG++VAS+SAF AIWGLMKFLERFSTWPFIVYRA LGAFLLVAV
Sbjct: 225 VLLHAHIPLEAWGVLLFGLLVASVSAFAAIWGLMKFLERFSTWPFIVYRAVLGAFLLVAV 284

Query: 121 SKGYLH 126
           ++G+L 
Sbjct: 285 AQGWLQ 290


>gi|300309828|ref|YP_003773920.1| bacitracin resistance undecaprenol
           kinase 2 [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score = 67.4 bits (163), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 63/125 (50%), Gaps = 9/125 (7%)

Query: 3   DALIVGIAQVGALIPGVSRSGSTLTAALFLNFKREEAARFSFLLGLPAIALAGL----KE 58
           DAL VGIAQ  ALIPG SRSG+T+   +     R+ A  FSF L +P +  A +    KE
Sbjct: 159 DALKVGIAQAFALIPGTSRSGATIIGGMMFGLSRKAATEFSFFLAIPTLFAATIYSLYKE 218

Query: 59  LAVLLHAQIPLQAWSLLLFGIVVASLSAFCAIWGLMKFLERFSTWPFIVYRAALGAFLLV 118
            A+L  A +P     L   G V A +SAF  +  L++++       F  YR   G  +LV
Sbjct: 219 RALLSAADVP-----LFTVGTVAAFVSAFLCVRWLLRYISSHDFTIFAWYRIIFGIIVLV 273

Query: 119 AVSKG 123
               G
Sbjct: 274 TAYTG 278


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.142    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 334,045
Number of extensions: 10421
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 2
Length of query: 126
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,264,745
Effective search space: 64501995
Effective search space used: 64501995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 125 (52.8 bits)