BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0140.0002.p (170 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310885|ref|YP_003774977.1| methyl-accepting chemotaxis tra... 213 5e-57 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 211 3e-56 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 204 3e-54 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 202 9e-54 gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I p... 202 1e-53 >gi|300310885|ref|YP_003774977.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 551 Score = 213 bits (543), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 121/167 (72%), Positives = 145/167 (86%) Query: 1 MNAIEQSSHKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS 60 M+ I+ S+ KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS Sbjct: 376 MDDIDASARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRS 435 Query: 61 ATAAKEIKELIGDSVAKINTGTSLVGNAGQTMQEIVGAVAQVASIMDQITHANREQSAGI 120 A AAKEIK LIGDSV K+++G LV AGQTMQEIV +VAQV ++++QI++A EQ AGI Sbjct: 436 AAAAKEIKVLIGDSVEKVDSGAHLVKKAGQTMQEIVKSVAQVNAVINQISNAGEEQRAGI 495 Query: 121 DEVNRAVVQMDMVTQQNAALVEQAAAAAESLQDQAAGLARTVSVFKL 167 ++VN+A+ QMD VTQQNAALVEQAAAA+ ++Q QAA LA VS+F+L Sbjct: 496 EQVNQAITQMDEVTQQNAALVEQAAAASRAMQTQAADLAEKVSIFRL 542 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 211 bits (537), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 119/170 (70%), Positives = 143/170 (84%) Query: 1 MNAIEQSSHKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS 60 M +I SS K+ DI+ VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRS Sbjct: 354 MQSINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 413 Query: 61 ATAAKEIKELIGDSVAKINTGTSLVGNAGQTMQEIVGAVAQVASIMDQITHANREQSAGI 120 A+AAKEIK LIGDSV K+ G+ LV AG TM +IV ++ +V +M +I HANREQS+GI Sbjct: 414 ASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGI 473 Query: 121 DEVNRAVVQMDMVTQQNAALVEQAAAAAESLQDQAAGLARTVSVFKLRSA 170 ++VN A++Q+D +TQQNAALVEQAAAAA SLQ+QAAGL + VSVF+L +A Sbjct: 474 EQVNEAIIQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAA 523 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 204 bits (520), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 119/167 (71%), Positives = 140/167 (83%) Query: 1 MNAIEQSSHKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS 60 M AI SS KI DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRS Sbjct: 345 MGAIHASSQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 404 Query: 61 ATAAKEIKELIGDSVAKINTGTSLVGNAGQTMQEIVGAVAQVASIMDQITHANREQSAGI 120 A+AAKEIK+LI DSV K++ G+ LV AG TMQE+V +VA+V +++ +IT A++EQS GI Sbjct: 405 ASAAKEIKQLIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGI 464 Query: 121 DEVNRAVVQMDMVTQQNAALVEQAAAAAESLQDQAAGLARTVSVFKL 167 ++VN A+ +D TQQNAALVEQAAAAA S+QDQAA L VSVF+L Sbjct: 465 EQVNLAITHIDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRL 511 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 202 bits (515), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 117/167 (70%), Positives = 141/167 (84%) Query: 1 MNAIEQSSHKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS 60 M+ I QSS KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS Sbjct: 350 MDEINQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRS 409 Query: 61 ATAAKEIKELIGDSVAKINTGTSLVGNAGQTMQEIVGAVAQVASIMDQITHANREQSAGI 120 A AAKEIK LI DSV K+ G++LV AG TM+++V +V V I+ +I+ A+ EQS+GI Sbjct: 410 AAAAKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGI 469 Query: 121 DEVNRAVVQMDMVTQQNAALVEQAAAAAESLQDQAAGLARTVSVFKL 167 +E+NRAV QMD TQQNAALVEQAAAAA+S+Q+QA L +++S+FKL Sbjct: 470 EEINRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKL 516 >gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 202 bits (513), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 122/168 (72%), Positives = 146/168 (86%) Query: 1 MNAIEQSSHKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS 60 M AI ++S++IV+II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRS Sbjct: 349 MEAINEASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 408 Query: 61 ATAAKEIKELIGDSVAKINTGTSLVGNAGQTMQEIVGAVAQVASIMDQITHANREQSAGI 120 A+AAKEIK+LI DSV+K+ GTSLV AG TM E+V +V +V ++ +I+ A+ EQS GI Sbjct: 409 ASAAKEIKQLIDDSVSKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGI 468 Query: 121 DEVNRAVVQMDMVTQQNAALVEQAAAAAESLQDQAAGLARTVSVFKLR 168 DE+NRAV QMD VTQQNAALVE+AAAAA+S+Q+QA+ LA TVSVFKLR Sbjct: 469 DEINRAVTQMDEVTQQNAALVEEAAAAAQSMQEQASRLAATVSVFKLR 516 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.124 0.310 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 246,684 Number of extensions: 6766 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 70 Length of query: 170 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 91 Effective length of database: 1,245,805 Effective search space: 113368255 Effective search space used: 113368255 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 127 (53.5 bits)