BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0139.0002.p (172 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311567|ref|YP_003775659.1| major facilitator superfamily p... 88 5e-19 gi|300313738|ref|YP_003777830.1| major facilitator superfamily p... 70 8e-14 gi|300311164|ref|YP_003775256.1| major facilitator superfamily p... 69 2e-13 gi|300313516|ref|YP_003777608.1| major facilitator superfamily p... 67 5e-13 gi|300313734|ref|YP_003777826.1| permease [Herbaspirillum serope... 65 2e-12 >gi|300311567|ref|YP_003775659.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] Length = 435 Score = 87.8 bits (216), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 78/133 (58%) Query: 1 VPYLFGALAMVFWGRHSDAKRERVWHLIGSFALAAVGFLVLSRMLDVHAAAMCGLIIAAM 60 +PY F A AMV GR +DA+RER WH+ + +G L+ ++ AM L +A++ Sbjct: 294 IPYAFAAAAMVLIGRSADARRERRWHVAIPAFIGCIGLLLSTQYGHNTTLAMASLTLASV 353 Query: 61 GVYASNVVLWSLPTSLLTGATAAAAVAFINSLANLSGVIAPSLLGWSRQTTGSFAATGYI 120 G+ + + WSLPT+ L+G AAA +A INSL NL+G ++P L+GW + T S A Y+ Sbjct: 354 GILTTLPLFWSLPTAFLSGTAAAAGIALINSLGNLAGFVSPFLVGWLKDATQSTNAGMYV 413 Query: 121 FFGFMACGIVLML 133 + G +L L Sbjct: 414 LAASLVIGGLLTL 426 >gi|300313738|ref|YP_003777830.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] Length = 445 Score = 70.5 bits (171), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 1/114 (0%) Query: 1 VPYLFGALAMVFWGRHSDAKRERVWHLIGSFALAAVGFLVLSRMLDVHAAAMCGLIIAAM 60 +PYL GA+AM W R ++ R++ + G+ LAA+ L +S L M + +A Sbjct: 298 IPYLVGAVAMTLWARLANRSERRLFFVAGAIVLAALS-LGISAFLHTPLLKMLAITVAVA 356 Query: 61 GVYASNVVLWSLPTSLLTGATAAAAVAFINSLANLSGVIAPSLLGWSRQTTGSF 114 + + W++P+ LTG AA +A I S+ NL G + PS++G+ R+ T F Sbjct: 357 SILSFQATFWAIPSGFLTGRAAAGGLALIVSIGNLGGFVGPSVIGFIREATQGF 410 >gi|300311164|ref|YP_003775256.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] Length = 437 Score = 68.9 bits (167), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 70/119 (58%) Query: 1 VPYLFGALAMVFWGRHSDAKRERVWHLIGSFALAAVGFLVLSRMLDVHAAAMCGLIIAAM 60 +P++ G LAM++ G HSD ER H + +A +G + L A+C L +AA+ Sbjct: 299 IPFIAGTLAMIWNGFHSDKTGERRLHSAIATLIACIGLVATGMTLGNATLALCSLTLAAI 358 Query: 61 GVYASNVVLWSLPTSLLTGATAAAAVAFINSLANLSGVIAPSLLGWSRQTTGSFAATGY 119 G+ A+ V WS+P + L G AA +A INS+ NL+G +AP ++G + +TGS ++ Y Sbjct: 359 GILAAFPVFWSIPGAFLAGTAAAGGIALINSIGNLAGFVAPYMIGALKTSTGSLSSGLY 417 >gi|300313516|ref|YP_003777608.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] Length = 437 Score = 67.4 bits (163), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 69/120 (57%) Query: 1 VPYLFGALAMVFWGRHSDAKRERVWHLIGSFALAAVGFLVLSRMLDVHAAAMCGLIIAAM 60 +P+ +AM GR +D RER WHL+ + VGF+ + D A ++ L +AA Sbjct: 296 IPFGCAIIAMNLIGRSADRMRERRWHLVIPALMGGVGFVGAALFADNTAVSIASLSLAAA 355 Query: 61 GVYASNVVLWSLPTSLLTGATAAAAVAFINSLANLSGVIAPSLLGWSRQTTGSFAATGYI 120 GV + WSLPT+ L+GA AA +A INS+ NL+G ++P L+G+ + T + A Y+ Sbjct: 356 GVLTCAPLFWSLPTAFLSGAAAAVGIAAINSVGNLAGFVSPYLIGYLKDLTHNNATGMYM 415 >gi|300313734|ref|YP_003777826.1| permease [Herbaspirillum seropedicae SmR1] Length = 431 Score = 65.5 bits (158), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 4/136 (2%) Query: 1 VPYLFGALAMVFWGRHSDAKRERVWHLIGSFALAAVGFLVLSRMLDVHAAAMCGLIIAAM 60 +PYL ++ MV+WGRHSD ER WH L G L L+ + + A + L + + Sbjct: 289 IPYLIASVLMVWWGRHSDRTGERRWHTAIPLMLIGGG-LALASLANSLAPVVLLLTMVLI 347 Query: 61 GVYASNVVLWSLPTSLLTGATAAAAVAFINSLANL-SGVIAPSLLGWSRQTTGSFAATGY 119 G Y+ W++ +S L +AAA +A IN+++NL G + ++ GW + TGS+A Sbjct: 348 GAYSFKGPFWAMASSWLATGSAAAGLAGINAVSNLIGGGLMVNVYGWVKDATGSYAMALL 407 Query: 120 IFFGF--MACGIVLML 133 G ++ GI+L L Sbjct: 408 PMVGLSVVSVGILLFL 423 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.134 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 443,123 Number of extensions: 15489 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 9 Length of query: 172 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 93 Effective length of database: 1,245,805 Effective search space: 115859865 Effective search space used: 115859865 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 127 (53.5 bits)