BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0138.0040.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311412|ref|YP_003775504.1| threonine synthase [Herbaspiril...   588   e-169

>gi|300311412|ref|YP_003775504.1| threonine synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 486

 Score =  588 bits (1516), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/309 (91%), Positives = 297/309 (96%), Gaps = 3/309 (0%)

Query: 1   MSAFQTAQMFSLQDPNIFNLAVEGVFDDCQDIVKAISNDLDYKAAQKIGGIGTVNSINWA 60
           MSAFQTAQMFSLQDPNIFNLA+EGVFDDCQDIVKAISNDL+YKAA+KIG   TVNSINWA
Sbjct: 181 MSAFQTAQMFSLQDPNIFNLAIEGVFDDCQDIVKAISNDLEYKAAKKIG---TVNSINWA 237

Query: 61  RVVAQVVYYFRGYLAATTSNVQKVSFTVPSGNFGNICAGHIARMMGLPIDKLVVATNEND 120
           RVVAQVVYYFRGYLAATTSN QKVSFTVPSGNFGNICAGHIARMMGLPIDKLVVATNEND
Sbjct: 238 RVVAQVVYYFRGYLAATTSNEQKVSFTVPSGNFGNICAGHIARMMGLPIDKLVVATNEND 297

Query: 121 VLDEFFRTGVYRVRKSAETYHTSSPSMDISKASNFERFIYDLLGRDSTRVKALFHKVETA 180
           VLDEFFRTG+YRVRKSAETYHTSSPSMDISKASNFERF+YDLLGRDS RVK LFHKVETA
Sbjct: 298 VLDEFFRTGIYRVRKSAETYHTSSPSMDISKASNFERFVYDLLGRDSARVKDLFHKVETA 357

Query: 181 GGFDLSGKPGSDGDEFASVIRYGFASGKSTHADRLEIIRFAEKSYGITVDTHTADGIKVA 240
           GGFDLSG+ GSDG+EF SVI+YGFASG+STHADRLE IRFAEK+YGITVDTHTADGIKVA
Sbjct: 358 GGFDLSGQAGSDGNEFTSVIQYGFASGRSTHADRLETIRFAEKTYGITVDTHTADGIKVA 417

Query: 241 RENLAEGVTMIVLETALPAKFNETIREALGRDADRPSGFENIEALPQRFEVMSADAAKVK 300
           RE+L  GVTMIVLETALPAKFNETIREALGRDADRP+GFENIEALPQRFEVM ADAA+VK
Sbjct: 418 REHLTPGVTMIVLETALPAKFNETIREALGRDADRPAGFENIEALPQRFEVMPADAARVK 477

Query: 301 AFVAKHTGL 309
           A+VA+HTGL
Sbjct: 478 AYVAQHTGL 486


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 857,843
Number of extensions: 33657
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)