BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0138.0032.p
         (363 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311410|ref|YP_003775502.1| homoserine dehydrogenase [Herba...   674   0.0  

>gi|300311410|ref|YP_003775502.1| homoserine dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 436

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/350 (94%), Positives = 342/350 (97%)

Query: 1   MVADLNTERATELTNGQVKVVNDANLVVNDPDIDIVIELIGGYGLAKDLVLKAIANGKHV 60
           MVADLNTERATELTNG+VKVVNDANLVV++PDIDIVIELIGGYG+AKDLVLKAIANGKHV
Sbjct: 41  MVADLNTERATELTNGEVKVVNDANLVVSNPDIDIVIELIGGYGIAKDLVLKAIANGKHV 100

Query: 61  VTANKALIATHGNEIFKAAQEKGVMVAFEAAVAGGIPIIKALREGLTANRIQWIAGIING 120
           VTANKALIATHGNEIFKAAQEKGVMVAFEAAVAGGIPIIKALREGLTANRIQWIAGIING
Sbjct: 101 VTANKALIATHGNEIFKAAQEKGVMVAFEAAVAGGIPIIKALREGLTANRIQWIAGIING 160

Query: 121 TTNFILSEMRDKGLDFDVVLKEAQRLGYAEADPTFDIEGVDAAHKLTIMASIAFGIPVQF 180
           TTNFILSEMRDKGLDFDVVLKEAQRLGYAEADPTFDIEGVDAAHKLTIMASIAFGIPVQF
Sbjct: 161 TTNFILSEMRDKGLDFDVVLKEAQRLGYAEADPTFDIEGVDAAHKLTIMASIAFGIPVQF 220

Query: 181 DKAHVEGITKLQATDIRYAEQLGYRIKLLGITRQTEKGIELRVHPTLIPTGRLIANVEGA 240
           DKAHVEGITKLQA+DI YAEQLGYRIKLLGITRQT KGIELRVHPTLIP  RLIANVEGA
Sbjct: 221 DKAHVEGITKLQASDITYAEQLGYRIKLLGITRQTAKGIELRVHPTLIPAARLIANVEGA 280

Query: 241 MNAVMVRGDAVGETLYYGKGAGSEPTASAVIADLVDITRLATADPEHRVPSLAFQPNAMA 300
           MNAV+VRGDAVGETLYYGKGAGSEPTASAVIADLVDITRLATADPEHRVP LAFQPNAMA
Sbjct: 281 MNAVVVRGDAVGETLYYGKGAGSEPTASAVIADLVDITRLATADPEHRVPYLAFQPNAMA 340

Query: 301 DTPVLPMQDVTTSYYLRMHVADKPGVLADVTRILADSSISIDAMLQKEPA 350
           DTPVLPM +V+TSYYLRM VAD+ GVLADVTRILADS+ISIDAMLQKEPA
Sbjct: 341 DTPVLPMSEVSTSYYLRMRVADQAGVLADVTRILADSTISIDAMLQKEPA 390


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,119,362
Number of extensions: 47833
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,212,660
Effective search space: 335906820
Effective search space used: 335906820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)