BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0138.0028.p
         (318 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311406|ref|YP_003775498.1| undecaprenyl-phosphate-4-amino-...   347   1e-96

>gi|300311406|ref|YP_003775498.1|
           undecaprenyl-phosphate-4-amino-L-arabinose--lipid A
           4-amino-L-arabinosyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 572

 Score =  347 bits (889), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 172/235 (73%), Positives = 201/235 (85%), Gaps = 2/235 (0%)

Query: 72  VLYIFPTLALLIASYLERASFKAIVWSASVVAVPCAIAMAFIPRVPSLAKDAYSLPLVTA 131
           VL IFP LALLIA YLE A  KA+ W+ S+VA+P A+A+AFIPRVP LAKDAYSLPLV A
Sbjct: 333 VLPIFPALALLIACYLEEADHKALAWAGSLVALPSAVALAFIPRVPELAKDAYSLPLVQA 392

Query: 132 HVPWIYAATIVAFIGAVLAIRFARSQKDLAVVFLAAAAFVSGQLLMLGHDPQGRYSAGID 191
           H+P++YA  ++ FIG + AIR AR  KD AV  LAA AF++GQLL+LGH+PQGRYSAG+D
Sbjct: 393 HMPYLYAGALIFFIGGIAAIRLARQNKDGAVTALAATAFLAGQLLILGHEPQGRYSAGVD 452

Query: 192 YVPALQAELTPETPMYLVGRYEQALPFYLQRTMTLVRHADEMEFGLKQEPQLWLPTIDAF 251
           YVPALQAEL PETP+YLVGRYEQ+LPFYL+RTMTLV+HADEM FGLKQEPQLWLPT+DAF
Sbjct: 453 YVPALQAELKPETPIYLVGRYEQSLPFYLRRTMTLVQHADEMAFGLKQEPQLWLPTVDAF 512

Query: 252 VAQWVTDHTAGKKDIAIMDPTVYADLKQRGVPMRLIGEDPRRVIVANN--PDAAS 304
           VAQWV DH AGKKDIAI++PT+Y  L +R +PMRLIG+DPRRVIVAN+  PDAA 
Sbjct: 513 VAQWVADHAAGKKDIAIINPTIYQQLLERKLPMRLIGQDPRRVIVANDPAPDAAE 567



 Score =  112 bits (281), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 52/63 (82%), Positives = 61/63 (96%)

Query: 1   MGLAGMMTLSICALLLAQRNDANRDEQRNWMLLCWAGMALAVLSKGLIGIVLPGAVLVLY 60
           MGL+GMMT+++CALL+AQR+ A+R+ QRNWMLLCWAGMALAVLSKGLIGIVLPGAVLVLY
Sbjct: 139 MGLSGMMTIALCALLMAQRDGASREGQRNWMLLCWAGMALAVLSKGLIGIVLPGAVLVLY 198

Query: 61  TIF 63
           T+F
Sbjct: 199 TLF 201


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,015,702
Number of extensions: 42221
Number of successful extensions: 175
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,217,395
Effective search space: 283653035
Effective search space used: 283653035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)