BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0138.0023.p
         (305 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311402|ref|YP_003775494.1| methionyl-tRNA formyltransferas...   552   e-158
gi|300313635|ref|YP_003777727.1| methionyl-tRNA formyltransferas...    84   1e-17

>gi|300311402|ref|YP_003775494.1| methionyl-tRNA formyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  552 bits (1423), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 262/304 (86%), Positives = 279/304 (91%)

Query: 1   MNAVVFAYHDVGVRCLKVLLARGVRVALVVTHEDSATENIWFNSVAGVCREYGIPYITPE 60
           MNAVVFAYHDVGVRCLKVLLARGV+V+LVVTHEDSATENIWF SVAGVCRE+GI  ITP 
Sbjct: 1   MNAVVFAYHDVGVRCLKVLLARGVQVSLVVTHEDSATENIWFGSVAGVCREHGIACITPA 60

Query: 61  DPKSPQLFTQVQAAQPDFIFSFYYRHMLPVNLLALAKHGAYNMHGSLLPKYRGRVPINWA 120
           DPKSPQL  QVQAAQPDFIFSFYYRHMLPV +LA AK GAYNMHGSLLPKYRGRVPINWA
Sbjct: 61  DPKSPQLLAQVQAAQPDFIFSFYYRHMLPVEVLAAAKRGAYNMHGSLLPKYRGRVPINWA 120

Query: 121 VLHGETETGATLHEMAAKPDAGAIVAQTAVPILPDDTAFEVFGKVVVAAEQTLWRVLPLI 180
           VLHGETETGATLHEM  KPDAGAIVAQT+VPILPDDTA EVFGKVVVAAE TLW VLP +
Sbjct: 121 VLHGETETGATLHEMTVKPDAGAIVAQTSVPILPDDTAHEVFGKVVVAAELTLWNVLPAM 180

Query: 181 LAGRTPKLPNDLSKGSYFGGRKPEDGRIDWKKPAQHVHNLVRTVAPPYPGAFEEIAGDKI 240
           L+GRTP +PNDLSKGSY+GGRKPEDGRIDW++ A+ VHNLVR VAPPYPGAFEEIA DKI
Sbjct: 181 LSGRTPSMPNDLSKGSYYGGRKPEDGRIDWRRTAREVHNLVRAVAPPYPGAFEEIADDKI 240

Query: 241 TLVRTRLVPASARPTLERSHGAQDKFFEGGRLYARCGDGNYLQILGIQINDQDASLNNYL 300
           T+ RTRLVP SA P L+R+HG QDKFFEGG+LYARCGDGN+LQILGIQINDQDASLNNYL
Sbjct: 241 TVTRTRLVPPSAHPALQRAHGMQDKFFEGGKLYARCGDGNFLQILGIQINDQDASLNNYL 300

Query: 301 KYMA 304
           KYMA
Sbjct: 301 KYMA 304


>gi|300313635|ref|YP_003777727.1| methionyl-tRNA formyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 123/281 (43%), Gaps = 20/281 (7%)

Query: 15  CLKVLLARGVRVALVVTHEDSAT---ENIWFNSVAGVCREYGIPYITPE----DPKSPQL 67
            L+ L A G  + LV+T  D        +  + V     ++G P   P     D K P++
Sbjct: 15  ALEALYAAGHEITLVLTQPDRPAGRGMQLQASPVKQCALKHGTPVAQPVSLRLDGKYPEV 74

Query: 68  FTQVQA---AQP-DFIFSFYYRHMLPVNLLALAKHGAYNMHGSLLPKYRGRVPINWAVLH 123
             +  A   + P D +    Y  +LP ++L + ++G  N+HGSLLP++RG  PI+ A+  
Sbjct: 75  AQEAHALLRSTPHDVMIVAAYGLILPRSVLDIPRYGCINIHGSLLPRWRGAAPIHRAIEA 134

Query: 124 GETETGATLHEMAAKPDAGAIVAQTAVPILPDDTAFEVFGKVVVAAEQTLWRVLPLILAG 183
           G+ ETG T+ +M    D G ++   ++PI  +DT   +  K+     + +   +  +  G
Sbjct: 135 GDAETGITIMQMEEGLDTGPMMLIESLPISDEDTTGSLHDKLAALGAKMIVEAMEKLEQG 194

Query: 184 RTPKLPNDLSKGSYFGGRKPEDGRIDWKKPAQHVHNLVRTVAPPYPGAFEEIAGDKITLV 243
             P  P      +Y      E+  +D+ + A+ +   +R    P+PGA        + L 
Sbjct: 195 TLPATPQPEQGANYAAKIAKEEAALDFSQSAEQLARRIRAFN-PFPGATGRFGDTVVKLW 253

Query: 244 RTRLVPAS--ARPTLERSHGAQDKFFEGGRLYARCGDGNYL 282
           + R V  +    P    S  AQ      G +   CG+G  L
Sbjct: 254 KARAVTVAQQGEPGQVLSADAQ------GGIVVACGEGALL 288


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,035,328
Number of extensions: 45965
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 2
Length of query: 305
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,217,395
Effective search space: 267826900
Effective search space used: 267826900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)