BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0138.0022.p
         (352 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311401|ref|YP_003775493.1| nucleoside-diphosphate-sugar ep...   672   0.0  

>gi|300311401|ref|YP_003775493.1| nucleoside-diphosphate-sugar
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 351

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/336 (94%), Positives = 327/336 (97%)

Query: 1   MKKVLILGVNGFIGHHLSKRILETTDWHVYGMDMMTDRITDILDNEEYKSRMHFFEGDIT 60
           MKKVLILGVNGFIGHHLSKRILETTDWHVYGMDMMTDRITDIL+NE YKSRMHFFEGDIT
Sbjct: 1   MKKVLILGVNGFIGHHLSKRILETTDWHVYGMDMMTDRITDILENEAYKSRMHFFEGDIT 60

Query: 61  INKEWVEYHVKKCDVILPLVAIATPSTYVNKPLRVFELDFEANLPIVRAAAKYGKHLVFP 120
           IN+EWVEYHVKKCDVILPLVAIATPSTYVN PLRVFELDFEANLPIVR+AAKY KHLVFP
Sbjct: 61  INQEWVEYHVKKCDVILPLVAIATPSTYVNAPLRVFELDFEANLPIVRSAAKYKKHLVFP 120

Query: 121 STSEVYGMCHDDEFDPEESELICGPINKPRWIYSCSKQLMDRVIWGYGMEDNLNFTLFRP 180
           STSEVYGMCHD+EFDPEESELICGPINKPRWIYSC+KQLMDRVIWGYGME  LNFTLFRP
Sbjct: 121 STSEVYGMCHDEEFDPEESELICGPINKPRWIYSCAKQLMDRVIWGYGMEAGLNFTLFRP 180

Query: 181 FNWIGAGLDSIHTPKEGSSRVVTQFFGHIVRGENISLVDGGQQKRAFTYIDDGIDALMKI 240
           FNWIGAGLDSIHTPKEGSSRVVTQFFGHIVRGENISLVDGG QKRAFTYIDDGIDALMKI
Sbjct: 181 FNWIGAGLDSIHTPKEGSSRVVTQFFGHIVRGENISLVDGGLQKRAFTYIDDGIDALMKI 240

Query: 241 IANEGGIATGKIYNIGNPTNNYSIKDLADMMLKLAAEYPEYADSAKQVKLVETTSAAYYG 300
           IANEGG+A+GKIYNIGNP NNYSIK+LADMMLKLAAEYPEYA++AKQVKLVETTSAAYYG
Sbjct: 241 IANEGGVASGKIYNIGNPVNNYSIKELADMMLKLAAEYPEYAETAKQVKLVETTSAAYYG 300

Query: 301 KGYQDVQNRVPKITNTCEELNWKPTFTMADTLRNIF 336
           KGYQDVQNRVPKITNTCEELNW PT TMADTLRNIF
Sbjct: 301 KGYQDVQNRVPKITNTCEELNWAPTTTMADTLRNIF 336


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,048,597
Number of extensions: 42648
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,212,660
Effective search space: 322567560
Effective search space used: 322567560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)