BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0138.0020.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311399|ref|YP_003775491.1| bacterioferritin comigratory ox...   253   5e-69
gi|300313595|ref|YP_003777687.1| peroxiredoxin protein [Herbaspi...    58   3e-10
gi|300309725|ref|YP_003773817.1| bacterioferritin comigratory pr...    53   8e-09

>gi|300311399|ref|YP_003775491.1| bacterioferritin comigratory
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score =  253 bits (645), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 115/140 (82%), Positives = 130/140 (92%)

Query: 1   MTSGKTFTLSDCKGKNLVLYFYPKDNTPGCTTEGIQFRESYPEFQKCNTEIFGISRDSLK 60
           MTSGKTF L+D +GKNLVLYFYPKDNTPGCTTEG+QFR+ + +FQ  NTEIFG+SRDSLK
Sbjct: 19  MTSGKTFQLADYQGKNLVLYFYPKDNTPGCTTEGMQFRDLHAQFQAANTEIFGVSRDSLK 78

Query: 61  SHEGFKAKLDMPFELISDPDETLCIMFDVMKMKNMYGKKVRGVERSTFVIDGSGTLVKEW 120
           SHE FKAKL MPFELISDPDETLC MFDVMKMKNMYGK+VRGVERSTFVIDG+G +VKEW
Sbjct: 79  SHENFKAKLGMPFELISDPDETLCTMFDVMKMKNMYGKQVRGVERSTFVIDGAGKVVKEW 138

Query: 121 RGVKVPSHVDEVLSFVKTIA 140
           RGVKVP+HVDEVL+F++T+A
Sbjct: 139 RGVKVPAHVDEVLAFIQTLA 158


>gi|300313595|ref|YP_003777687.1| peroxiredoxin protein
           [Herbaspirillum seropedicae SmR1]
          Length = 187

 Score = 58.2 bits (139), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 10/114 (8%)

Query: 7   FTLSDCKGKNLVLYFYPKDNTPGCTTEGIQFRESYPEFQKCNTEIFGISRDSLKSHEGF- 65
            T +  KGK  V  FYP D T  C TE     ++Y EF+K   EI+G+S D+  +H+ + 
Sbjct: 24  ITEATLKGKWSVFVFYPADFTFVCPTELEDLADNYAEFKKLGVEIYGVSTDTHFAHKAWH 83

Query: 66  ---KAKLDMPFELISDPDETLCIMFDVMKMKNMYGKKVRGVERSTFVIDGSGTL 116
              +A   + + L+ DP  TL   F+V+  +   G  +RG    TFVI+  G +
Sbjct: 84  DTSEAIKKVQYPLVGDPTATLARNFEVLIEEE--GLALRG----TFVINPEGQI 131


>gi|300309725|ref|YP_003773817.1| bacterioferritin comigratory
           protein [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score = 53.1 bits (126), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 9/131 (6%)

Query: 6   TFTLSDCKGKN-LVLYFYPKDNTPGCTTEGIQFRESYPEFQKCNTEIFGISRDSLKSHEG 64
           TFTLS+   K  +VLYFYP   T GCT E   F E+   ++     + G+S D++++   
Sbjct: 59  TFTLSEALKKGPVVLYFYPAAFTSGCTIEAHLFAEAVDRYKALGATVIGVSGDNIETLNK 118

Query: 65  FK-AKLDMPFELISDPDETLCIMFDVMKMKNMYGKKVRG-VERSTFVIDGSGTLVKEWRG 122
           F  ++    F + +D D+ +   +D   +      KV G   R+++VI     ++ E+  
Sbjct: 119 FSVSECRSKFAVAADVDKKIMKAYDAQFL------KVTGYASRTSYVITPDHAILYEYTD 172

Query: 123 VKVPSHVDEVL 133
           +    HV+  +
Sbjct: 173 MNPEKHVENTM 183


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 400,188
Number of extensions: 13665
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 3
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)