BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0138.0014.p
         (168 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312815|ref|YP_003776907.1| amino acid ABC transporter/sign...   121   3e-29
gi|300313151|ref|YP_003777243.1| glutamate/aspartate ABC transpo...   108   3e-25

>gi|300312815|ref|YP_003776907.1| amino acid ABC transporter/signal
           transduction system periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 305

 Score =  121 bits (303), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 90/164 (54%)

Query: 2   RMLVKAGSSIKNWNDLRNKRVVTTRATAMIDVINKRSNIRYLDLTVVERDGDRECFSMLE 61
           R+L K  S IK++ DL  K VVT   T    ++   +  R + + +       E F +L+
Sbjct: 139 RILTKRDSGIKDFPDLAGKAVVTNAGTTSEQLLRNLNEHRKMGMQIQSAKDYGEAFLILQ 198

Query: 62  HGMADAFIMDEILLYGARENAVDPEKFAIVGTPLSVEPYAIMLRNDDPEFKKMVDRQMAR 121
            G   A++MD++LL GAR  A  P  + + G P   EPYA M+R DDP+FK++VD  ++ 
Sbjct: 199 SGRVAAYVMDDVLLAGARTTAQKPNDWVLTGNPFGAEPYAFMVRRDDPQFKQLVDDTLSG 258

Query: 122 LANSGEIYRLYNRWFMQPIGPDKRSLDMPMSYILRDSLRYPTDK 165
           L  SGEI ++Y +WF  PI P   S + PMS  +      P+DK
Sbjct: 259 LMKSGEIKKIYAKWFTFPIPPKNVSFNFPMSDTVMKLYATPSDK 302


>gi|300313151|ref|YP_003777243.1| glutamate/aspartate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 315

 Score =  108 bits (269), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%)

Query: 2   RMLVKAGSSIKNWNDLRNKRVVTTRATAMIDVINKRSNIRYLDLTVVERDGDRECFSMLE 61
           + L K  +++K   DL+ K VV+T  T+ +  I   +  R L + ++      E F M+E
Sbjct: 132 KFLSKKAANLKTLEDLKGKTVVSTSGTSNLKQITALNAERNLGMNILAAKDHAEAFLMVE 191

Query: 62  HGMADAFIMDEILLYGARENAVDPEKFAIVGTPLSVEPYAIMLRNDDPEFKKMVDRQMAR 121
            G A AF+MD+ILL     N+  P  + +    LSVEPY ++L   D EFK +VD  +  
Sbjct: 192 TGRAAAFVMDDILLSSLAANSKAPGDYQVSSEALSVEPYGLILPKGDKEFKTVVDDALTV 251

Query: 122 LANSGEIYRLYNRWFMQPIGPDKRSLDMPMSYILRDSLRYPTD 164
           +    +I ++Y +WF  PI P   +L++PMS  L+  L  PTD
Sbjct: 252 VYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVLAKPTD 294


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 477,208
Number of extensions: 17852
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 168
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,245,805
Effective search space: 110876645
Effective search space used: 110876645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)