BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0138.0013.p
         (141 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312815|ref|YP_003776907.1| amino acid ABC transporter/sign...    58   3e-10
gi|300313151|ref|YP_003777243.1| glutamate/aspartate ABC transpo...    58   3e-10

>gi|300312815|ref|YP_003776907.1| amino acid ABC transporter/signal
           transduction system periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 305

 Score = 58.2 bits (139), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 8/126 (6%)

Query: 4   NRLFPFLFLVILLSTLAATASARD-----TIKKIRETRTIVLSFMGSVDNLSPFVVIEPD 58
           N   P   L ++L+ L   A A D     T++KI++   I +   G   +  PF   + +
Sbjct: 6   NLAVPAAMLSMMLAVLPQQACAADSALGPTLQKIKDANLIAI---GHRTSSIPFSYYDEN 62

Query: 59  GEVSGYTVELCRKIIQGIRQELRMPDIKIQYLPVNASSRFTALLDNRADLECSVSTNNAE 118
            +V GY+ +LC K+I  ++ ++    ++++ +PV + +R   L +   DLEC V++N   
Sbjct: 63  QQVIGYSQDLCNKVIDAVKTKIGAAKLEVRMVPVTSQNRTPLLQNGTIDLECGVTSNLKS 122

Query: 119 RRKKFS 124
           R ++ S
Sbjct: 123 RWQQVS 128


>gi|300313151|ref|YP_003777243.1| glutamate/aspartate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 315

 Score = 58.2 bits (139), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 29  IKKIRETRTIVLSFMGSVDNLSPFVVIEPDGEVSGYTVELCRKIIQGIRQELRMPDIKIQ 88
           +KKI+++ T+ L   G  D+  PF  ++      GY+++LC K    I+++L +  + I+
Sbjct: 29  LKKIKDSGTLTL---GVRDSSIPFSYLDDKQSYQGYSIDLCLKAATAIQKKLGLTSLNIK 85

Query: 89  YLPVNASSRFTALLDNRADLECSVSTNNAERRKKFS 124
            +PV +++R   + +   D+ C  +TNN ER  + +
Sbjct: 86  MVPVTSATRIPLIANGTTDISCDSATNNQERWNQVA 121


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 322,792
Number of extensions: 10592
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 2
Length of query: 141
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 65
Effective length of database: 1,260,010
Effective search space: 81900650
Effective search space used: 81900650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)