BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0138.0012.p (260 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310887|ref|YP_003774979.1| metal ion ABC transporter perip... 445 e-126 gi|300310325|ref|YP_003774417.1| metal ion ABC transporter perip... 204 6e-54 gi|300314030|ref|YP_003778122.1| metal ion ABC transporter perip... 195 2e-51 gi|300311120|ref|YP_003775212.1| metal ion ABC transporter perip... 178 3e-46 gi|300311637|ref|YP_003775729.1| metal ion ABC transporter perip... 130 1e-31 >gi|300310887|ref|YP_003774979.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 445 bits (1145), Expect = e-126, Method: Compositional matrix adjust. Identities = 226/257 (87%), Positives = 235/257 (91%), Gaps = 1/257 (0%) Query: 1 MSRKL-SLLLATSLTLFAAAAQAADKLVIAATPVPHAEILEFIKPTLAKEGVDLQVKVFT 59 M RKL L A + F+ A AADKLVIAATPVPHAEILE IKP LAKEG+DLQVKVFT Sbjct: 1 MIRKLIPHLFAGAALAFSVGAHAADKLVIAATPVPHAEILEHIKPALAKEGIDLQVKVFT 60 Query: 60 DYVQPAAQTNEKQVDGNFFLHQPYLDEFKKSHKNDIEVPVTKVHVEPFAAYSQKYKKTAD 119 DYVQPAAQTNEKQVDGNFFLHQPYLD+FKKSHKNDIEVPV KVHVEPFAAYSQKYKK AD Sbjct: 61 DYVQPAAQTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPVAKVHVEPFAAYSQKYKKIAD 120 Query: 120 IPNGATIAIPNDPSNSGRALLLLARNGLIKLKDASSISATQKDITDNPKKLKFRELEAAT 179 IPNGATIAIPNDPSNSGRALLLLARNGLIKLKD ++ISATQKDI +NPKKLKFR LEAAT Sbjct: 121 IPNGATIAIPNDPSNSGRALLLLARNGLIKLKDNTNISATQKDIVENPKKLKFRALEAAT 180 Query: 180 LPRVLNQVDVALINTNYAIEAKLNPVKDSLFIEDANSPYANLLVARTDNKDSAAIKKLAA 239 LPRVLNQVDVALINTNYA+EAKLNPVKDSLFIEDANSPYANLLVAR DNKDS AIKKLAA Sbjct: 181 LPRVLNQVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDSPAIKKLAA 240 Query: 240 ALNSPAVKKFIEEKYKG 256 ALNSP VKKFIEEKY+G Sbjct: 241 ALNSPDVKKFIEEKYQG 257 >gi|300310325|ref|YP_003774417.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 204 bits (519), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 112/249 (44%), Positives = 151/249 (60%), Gaps = 1/249 (0%) Query: 9 LATSLTLFAAAAQAADKLVIAATPVPHAEILEFIKPTLAKEGVDLQVKVFTDYVQPAAQT 68 L + L +A A A D++ + T PHAEI+E +K L K+GV ++V FTDY+QP A Sbjct: 13 LGLAAGLVSAPAFAQDQIKMGVTAGPHAEIMEQVKKLLEKDGVQMKVIEFTDYIQPNAAL 72 Query: 69 NEKQVDGNFFLHQPYLDEFKKSHKNDIEVPVTKVHVEPFAAYSQKYKKTADIPNGATIAI 128 +D N + HQPYLD K V V P YS+K K D+ GA + + Sbjct: 73 AAGDLDANSYQHQPYLDAQIKDRGYKF-VSVGSTITFPMGVYSKKIKSLNDLKQGARVGV 131 Query: 129 PNDPSNSGRALLLLARNGLIKLKDASSISATQKDITDNPKKLKFRELEAATLPRVLNQVD 188 PNDP+N GRALL+L G+IKLK + + AT DI +NPKK+K EL+AA LPR L+ D Sbjct: 132 PNDPTNGGRALLVLQAKGVIKLKADAGLKATPLDIVENPKKIKIVELDAAQLPRSLDDFD 191 Query: 189 VALINTNYAIEAKLNPVKDSLFIEDANSPYANLLVARTDNKDSAAIKKLAAALNSPAVKK 248 A+IN NYA A L+P KD++ +E + PYAN++ R +KD + KL A +SP VKK Sbjct: 192 AAVINGNYAESAGLSPTKDAIAVEASTGPYANVIAVRIADKDKPWVAKLVKAYHSPEVKK 251 Query: 249 FIEEKYKGN 257 F+ EKYKG+ Sbjct: 252 FVLEKYKGS 260 >gi|300314030|ref|YP_003778122.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 276 Score = 195 bits (496), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 105/263 (39%), Positives = 158/263 (60%), Gaps = 9/263 (3%) Query: 3 RKLSLLLATSLTLFAAAAQAA-DKLV-IAATPVPHAEILEFIKPTLAKEGVDLQVKV--F 58 R+LS L+ + L AQAA D+++ + T PHA+I E + ++ +VK+ F Sbjct: 10 RRLSTLMVSMLASLVLNAQAAADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVKIIEF 69 Query: 59 TDYVQPAAQTNEKQVDGNFFLHQPYLDEFKKSHKNDIEVPVTKVHVEPFAAYSQKYKKTA 118 DY+QP A + ++D N + H+P+L+ K+ + K + P A YS+KY+K Sbjct: 70 NDYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAE-GKTMIGPMAIYSRKYRKLE 128 Query: 119 DIPNGATIAIPNDPSNSGRALLLLARNGLIKLKDA----SSISATQKDITDNPKKLKFRE 174 D+P GA I IPNDP+N R LLLL ++G IKL+ + +AT DIT+NPKK KF E Sbjct: 129 DVPVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDITENPKKWKFVE 188 Query: 175 LEAATLPRVLNQVDVALINTNYAIEAKLNPVKDSLFIEDANSPYANLLVARTDNKDSAAI 234 ++AA LPR L+ +D + +N +YA +A LNP +DSL +E +SPYA L+ R ++ + Sbjct: 189 IDAAQLPRTLDDLDASAVNADYAAKAGLNPARDSLVVESGDSPYACLIAVREKDRAQPWL 248 Query: 235 KKLAAALNSPAVKKFIEEKYKGN 257 KL A SP VK++IE ++KG Sbjct: 249 GKLVQAYQSPEVKRYIETEFKGG 271 >gi|300311120|ref|YP_003775212.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 178 bits (452), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 105/260 (40%), Positives = 154/260 (59%), Gaps = 6/260 (2%) Query: 3 RKLSLLLATSLTLFAAAAQAADKLVI-AATPVPHAE-ILEFIKPTLAKEGVDLQVKVFTD 60 ++L+ + A SL L QA DK I V AE I + +K A++G+++Q VF+D Sbjct: 11 KRLAAIGALSLALVPQLGQAQDKQKIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFSD 70 Query: 61 YVQPAAQTNEKQVDGNFFLHQPYLDEFKKSHKNDIEVPVTKVHVEPFAAYSQKYKKTADI 120 Y+QP A +D N F H+PYL+ + I VPV P YS+K++ + Sbjct: 71 YLQPNAALAAGDLDANAFQHRPYLESQIAARGYRI-VPVGLTITAPLGIYSRKFRSVEQL 129 Query: 121 PNGATIAIPNDPSNSGRALLLLARNGLIKLKDA---SSISATQKDITDNPKKLKFRELEA 177 P GA I I NDPSN RALLLL + GLI+LK + ++AT D+ +NP+KLK EL+A Sbjct: 130 PQGAAIGIQNDPSNGNRALLLLQKAGLIRLKPGVGENGVNATPLDVIENPRKLKLVELDA 189 Query: 178 ATLPRVLNQVDVALINTNYAIEAKLNPVKDSLFIEDANSPYANLLVARTDNKDSAAIKKL 237 A LPR L+ + A IN +YA +A L+ KD++ +ED YAN++ R ++KD ++KL Sbjct: 190 AQLPRSLDDLAAASINNDYAFKAGLSLQKDTIAVEDPRGRYANIIATRAEDKDRPWVRKL 249 Query: 238 AAALNSPAVKKFIEEKYKGN 257 A +S V+KFIE ++KG+ Sbjct: 250 VQAYHSEEVRKFIETEFKGS 269 >gi|300311637|ref|YP_003775729.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 130 bits (327), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/252 (35%), Positives = 127/252 (50%), Gaps = 19/252 (7%) Query: 4 KLSLLLATSLTLFA-AAAQAADKLVIAATPVPHAEILEFIKPTLAKEGVDLQVKVFTDYV 62 K S L+ SLT+ + AAQAADKL I P + + + ++G+D+QV FTD+ Sbjct: 2 KFSHLVFLSLTVLSLQAAQAADKLRIGVVPGAYGDSVAVAAKEAKRQGIDVQVVEFTDWT 61 Query: 63 QPAAQTNEKQVDGNFFLHQPYLDEFKKSHKNDIEVPVTKVHVEPFAAYSQKYKKTADIPN 122 P + +D N+F HQP+LD + + + T + + YS KYK +P Sbjct: 62 TPNVALDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGI-LSNVGLYSLKYKSLTALPQ 120 Query: 123 GATIAIPNDPSNSGRALLLLARNGLIKLKDASSISATQKDITDNPKKLKFRELEAATLPR 182 GA + I NDP N GRALLLL GLIKLK + DI DNP+KL F E+E L R Sbjct: 121 GAKVGIANDPVNQGRALLLLQNVGLIKLKPKVGYLGSIDDIIDNPRKLSFVEVEGPQLVR 180 Query: 183 VLNQVDVALINTNYAIEAK-LNPVKDSLF--IEDANSPYANLLVARTDNKDSAAIKKLAA 239 + VD+A ++ + AK +P + IEDA +A V R + Sbjct: 181 ITPDVDLAQGYPHFIVAAKAFDPSSGLAYSGIEDAR--FAIQFVTRANR----------- 227 Query: 240 ALNSPAVKKFIE 251 +N P V+KFI+ Sbjct: 228 -VNDPVVQKFIQ 238 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.130 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 593,572 Number of extensions: 20249 Number of successful extensions: 63 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 56 Number of HSP's successfully gapped: 5 Length of query: 260 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 177 Effective length of database: 1,226,865 Effective search space: 217155105 Effective search space used: 217155105 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 129 (54.3 bits)