BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0138.0011.p
         (220 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310888|ref|YP_003774980.1| metal ion ABC transporter perme...   308   2e-85
gi|300310326|ref|YP_003774418.1| metal ion ABC transporter perme...   171   5e-44
gi|300311639|ref|YP_003775731.1| metal ion ABC transporter perme...   157   6e-40

>gi|300310888|ref|YP_003774980.1| metal ion ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  308 bits (790), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 192/219 (87%), Positives = 205/219 (93%)

Query: 2   IDFSVIDWGDIGQATLETLAMTGLSLFFTVLIGLPLGILLFLTARKQLLAQRGIYLVLSL 61
           ID SVIDWG++G ATLETLAMTG SLFFTVL+GLPLGILLFLT R+QLL QRG+YLVLSL
Sbjct: 11  IDLSVIDWGEVGDATLETLAMTGGSLFFTVLLGLPLGILLFLTNRRQLLEQRGLYLVLSL 70

Query: 62  AVNVLRSVPFLILLIVMIPITLLLVGTSLGVEGSIPPLVIGTAPFFARLVENVLREIDRG 121
            VNVLRSVPFLILLI++IP TL LVGTSLGV G+IPPLVIGTAPFFARL E+VLREIDRG
Sbjct: 71  VVNVLRSVPFLILLIMLIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLTESVLREIDRG 130

Query: 122 VLEACQAMGAKTHQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIR 181
           +LEAC AMGA+  QIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIR
Sbjct: 131 ILEACTAMGARRRQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIR 190

Query: 182 YGYQRFQTEVMIVTVAVLVVLVQLLQFFGDRLVLHFTRK 220
           YGYQRFQTEVM+VTVA+LVVLVQLLQFFGDRLVL FTRK
Sbjct: 191 YGYQRFQTEVMVVTVAILVVLVQLLQFFGDRLVLRFTRK 229


>gi|300310326|ref|YP_003774418.1| metal ion ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 217

 Score =  171 bits (433), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 110/220 (50%), Positives = 144/220 (65%), Gaps = 7/220 (3%)

Query: 1   MIDFSVIDWGDIGQATLETLAMTGLSLFFTVLIGLPLGILLFLTARKQLLAQRGIYLVLS 60
           +ID  V  +G       ETL M  +S     L+G+PLGI L +T  K +L       +  
Sbjct: 5   LIDLFVSSFG-------ETLMMVVISGVVGSLLGIPLGIALHITEAKGVLPNVAFNRIAG 57

Query: 61  LAVNVLRSVPFLILLIVMIPITLLLVGTSLGVEGSIPPLVIGTAPFFARLVENVLREIDR 120
           L VN +RS PF+ILL+ +IP+T   VGTS+G   +I PL I  APF ARLVE  LRE+D 
Sbjct: 58  LLVNAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDH 117

Query: 121 GVLEACQAMGAKTHQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAI 180
           G++EA QAMGA T QII+  L+PEA  G++A +TIT ++L+ Y+AM+G IGGGGLGDL I
Sbjct: 118 GLVEAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGI 177

Query: 181 RYGYQRFQTEVMIVTVAVLVVLVQLLQFFGDRLVLHFTRK 220
           RYGYQRF  EVM+  V +L+V VQL+Q  GD LV   + +
Sbjct: 178 RYGYQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217


>gi|300311639|ref|YP_003775731.1| metal ion ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 199

 Score =  157 bits (397), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 91/199 (45%), Positives = 134/199 (67%)

Query: 22  MTGLSLFFTVLIGLPLGILLFLTARKQLLAQRGIYLVLSLAVNVLRSVPFLILLIVMIPI 81
           M  +S    ++ G+PL +LL ++A    L    ++ VL   +N  R+ PF++LL+ +IP+
Sbjct: 1   MVSVSGALALVAGVPLAVLLIVSAPGGFLDWPRLHRVLGSVINGFRATPFIVLLVALIPL 60

Query: 82  TLLLVGTSLGVEGSIPPLVIGTAPFFARLVENVLREIDRGVLEACQAMGAKTHQIIFGAL 141
           T L+ GT++GV  +I PL I   PFFAR+VE  LRE+D G++EA QA+G +   I++   
Sbjct: 61  TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCRKWDIVWHVY 120

Query: 142 LPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIRYGYQRFQTEVMIVTVAVLVV 201
           LPEALPG++   TIT + L+S +AM+G +G GGLGDLAIRYGYQRF T+VM++ +A+L+V
Sbjct: 121 LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIAMLIV 180

Query: 202 LVQLLQFFGDRLVLHFTRK 220
           LV L+Q  GD  V     +
Sbjct: 181 LVSLVQRTGDSYVRRLRNR 199


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.147    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 444,784
Number of extensions: 13448
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 6
Length of query: 220
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,231,600
Effective search space: 169960800
Effective search space used: 169960800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)