BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0138.0010.p (340 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas... 461 e-131 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 294 7e-81 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 290 1e-79 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 190 1e-49 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 183 2e-47 >gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 461 bits (1186), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/340 (67%), Positives = 269/340 (79%), Gaps = 4/340 (1%) Query: 1 VIRIEHLHKNYQVANRDITALTDINLHIDAGEIFGVIGRSGAGKSTLIRTLNLLERPSSG 60 +IRIE LHK Y+ RDI AL DINL I GE+FG+IGRSGAGKSTLIRTLN+LERP SG Sbjct: 1 MIRIEQLHKTYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSG 60 Query: 61 SIFIEGEDITRFDGAQLHALRQRVGMIFQHFNLLNAKTVAANIDWPLKITGKYTREQRAA 120 + I+GEDIT L LRQRVGM+FQHFNLLNAKTVA NIDWPLKITG+Y+RE+RAA Sbjct: 61 RVLIDGEDITGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAA 120 Query: 121 RVSELLELVGLSEHRDKYPAQLSGGQKQRVGIARALANYPHLLLCDEATSALDPETTQSI 180 RV ELL+LVGL HRD+YP+QLSGGQKQRVGIARALAN+P LLLCDEATSALDPETTQSI Sbjct: 121 RVDELLQLVGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSI 180 Query: 181 LRLLLDINRKLGLTIVLITHEMQVIRSICDRVAVIDDSRIVESGKVTDVFLHPRHAVTQK 240 LRLLL+INRKLGLTIVLITHEM+VIRSICDRVAV+D + E G+V D+FL P+HAVT+ Sbjct: 181 LRLLLEINRKLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHAVTRS 240 Query: 241 LVAESHTFEQQDGIGLEHIKGKVVRLTFVGDITYQPILTNITAATISRIKDIPYGXKGTI 300 L+ +SH ++ + + GK+VRLT+ GDI QPIL+ +TAAT S + I +GT+ Sbjct: 241 LLTQSHAWDAGESLYQRRPDGKLVRLTYAGDIAAQPILSQLTAAT-SALATI---VRGTV 296 Query: 301 SRIKDIPYGQLLVELNGSDEDLAKVFAHFDHYRIHHEVLA 340 SRIKD PYGQLLVE +G + LA+V I HEVLA Sbjct: 297 SRIKDTPYGQLLVEFSGDADALAQVLDRLQTSDIEHEVLA 336 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 294 bits (752), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 158/328 (48%), Positives = 216/328 (65%), Gaps = 24/328 (7%) Query: 17 DITALTDINLHIDAGEIFGVIGRSGAGKSTLIRTLNLLERPSSGSIFIEGEDITRFDGAQ 76 ++ A+ ++L I GEIFG+IGRSGAGKSTL+RTLNLL RP+SG I ++G+D+T AQ Sbjct: 13 NVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDLTSLSAAQ 72 Query: 77 LHALRQRVGMIFQHFNLLNAKTVAANIDWPLKITGKYTREQRAARVSELLELVGLSEHRD 136 L R+ +GMIFQHFNLL++++V NI PL++ GK ++ + AA+V LLELVGL+ RD Sbjct: 73 LREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGK-SKAEIAAKVEPLLELVGLTALRD 131 Query: 137 KYPAQLSGGQKQRVGIARALANYPHLLLCDEATSALDPETTQSILRLLLDINRKLGLTIV 196 +YPAQ+SGGQKQRVGIARALAN P +LL DEATSALDPETT+SIL LL IN++LGLTIV Sbjct: 132 RYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINKELGLTIV 191 Query: 197 LITHEMQVIRSICDRVAVIDDSRIVESGKVTDVFLHPRHAVTQKLVAESHTFEQQDGI-- 254 LITH+M+VI+ ICDRVAV++ +++E G+V DVF PRH VT+ L+ + E G+ Sbjct: 192 LITHQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIGDVIAHELPKGVLA 251 Query: 255 -------------GLEHIKGKVVRLTFVGDITYQPILTNITAATISRIKDIPYGXKGTIS 301 G +H+ R F G+ QP L+ + R G I Sbjct: 252 RLRERLARADAGQGTDHL----FRFAFTGNDVDQPHLSE----AVRRFNLDFNILHGQID 303 Query: 302 RIKDIPYGQLLVELNGSDEDLAKVFAHF 329 I+ +G L + NG+ +++ + + Sbjct: 304 EIQGQAFGSLAILANGTQDNINQAMQYL 331 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 290 bits (742), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 165/311 (53%), Positives = 207/311 (66%), Gaps = 11/311 (3%) Query: 9 KNYQVANRDITALTDINLHIDAGEIFGVIGRSGAGKSTLIRTLNLLERPSSGSIFIEGED 68 K Y A + AL DI+L I G IFG+IGRSGAGKS+L+RT+N LERP+SG + ++ D Sbjct: 46 KTYVSAAGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVD 105 Query: 69 ITRFDGAQLHALRQRVGMIFQHFNLLNAKTVAANIDWPLKITGKYTREQRAARVSELLEL 128 + D QL ALR+R+GMIFQHFNLL AKTV NI PL++ G R Q RV ELL L Sbjct: 106 LATLDETQLVALRRRIGMIFQHFNLLAAKTVFDNIALPLRVAG-VPRAQITQRVHELLAL 164 Query: 129 VGLSEHRDKYPAQLSGGQKQRVGIARALANYPHLLLCDEATSALDPETTQSILRLLLDIN 188 VGL + D YP +LSGGQKQRVGIARALA+ P +LLCDEATSALDPETTQSIL+LL DIN Sbjct: 165 VGLQDKADSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDIN 224 Query: 189 RKLGLTIVLITHEMQVIRSICDRVAVIDDSRIVESGKVTDVFLHPRHAVTQKLVAE-SHT 247 RKLG+TI+LITHEM VIR I DRV V++ R+ E G+V VF P+HA T+ L+A H Sbjct: 225 RKLGITIILITHEMSVIREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRALLAPLQHG 284 Query: 248 FEQ--QDGIGLEHIKG---KVVRLTFVGDITYQPILTNITAATISRIKDIPYGXKGTISR 302 Q Q + + G +V++L F G QP L I A R++ + G + Sbjct: 285 LPQELQQALQPQAPAGRHERVLQLEFHGGDGLQPDLQRIAAVLGGRVRVLQAG----VDH 340 Query: 303 IKDIPYGQLLV 313 I+ +GQL++ Sbjct: 341 IQGHTHGQLVL 351 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 190 bits (483), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 102/243 (41%), Positives = 151/243 (62%), Gaps = 5/243 (2%) Query: 1 VIRIEHLHKNYQVANRDITALTDINLHIDAGEIFGVIGRSGAGKSTLIRTLNLLERPSSG 60 +++I+ LHK++ +N+ L ++L + G++ +IG+SG+GKSTL+R LN LE+ +G Sbjct: 4 IVKIKDLHKSFG-SNK---VLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAG 59 Query: 61 SIFIEGEDITRFDGAQLHALRQRVGMIFQHFNLLNAKTVAANIDWPLKITGKYTREQRAA 120 I + G DI D L LR++VG++FQ +NL TV NI L K + EQ Sbjct: 60 DIQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKT 119 Query: 121 RVSELLELVGLSEHRDKYPAQLSGGQKQRVGIARALANYPHLLLCDEATSALDPETTQSI 180 ++L+LVGL +D YP QLSGGQ QRV IAR+LA P L+L DE TSALDPE T + Sbjct: 120 IAHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEV 179 Query: 181 LRLLLDINRKLGLTIVLITHEMQVIRSICDRVAVIDDSRIVESGKVTDVFLHPRHAVTQK 240 L+++ D+ R G+T+VL+THEM R + D + + ++ E G ++F HP+ A QK Sbjct: 180 LKVMEDLARG-GMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQK 238 Query: 241 LVA 243 V+ Sbjct: 239 FVS 241 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 183 bits (464), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 99/223 (44%), Positives = 137/223 (61%), Gaps = 4/223 (1%) Query: 21 LTDINLHIDAGEIFGVIGRSGAGKSTLIRTLNLLERPSSGSIFIEGEDITRFDGAQLHAL 80 L D++L + GE+ +IG SG+GKST++R +N LE G I I+G+ + R DG +H L Sbjct: 17 LKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILIDGQRVDR-DGPDIHRL 75 Query: 81 RQRVGMIFQHFNLLNAKTVAANI-DWPLKITGKYTREQRAARVSELLELVGLSEHRDKYP 139 R RVGM+FQ FNL +TV N+ + P+ + G R Q + LL+ VGL+ D YP Sbjct: 76 RTRVGMVFQRFNLFPHRTVLENVTEGPIYVNG-LARAQARSEAMSLLDKVGLAARCDAYP 134 Query: 140 AQLSGGQKQRVGIARALANYPHLLLCDEATSALDPETTQSILRLLLDINRKLGLTIVLIT 199 AQLSGGQ+QRV IAR+LA P +L DE TSALDPE +L ++ + G+T++++T Sbjct: 135 AQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMRTLAAD-GMTMIVVT 193 Query: 200 HEMQVIRSICDRVAVIDDSRIVESGKVTDVFLHPRHAVTQKLV 242 HEM R + DRV + IVESG V P+HA TQ + Sbjct: 194 HEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFL 236 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.139 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 955,661 Number of extensions: 37452 Number of successful extensions: 506 Number of sequences better than 1.0e-08: 134 Number of HSP's gapped: 299 Number of HSP's successfully gapped: 149 Length of query: 340 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 254 Effective length of database: 1,212,660 Effective search space: 308015640 Effective search space used: 308015640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)