BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0138.0009.p
         (147 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312098|ref|YP_003776190.1| transmembrane protein [Herbaspi...   112   2e-26

>gi|300312098|ref|YP_003776190.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score =  112 bits (279), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/148 (60%), Positives = 103/148 (69%), Gaps = 15/148 (10%)

Query: 3   VVKS-PSRIHPLVATAAVAVTLVSLVGVAAITGLLPTSNSSVAPQQ-AMTDATTAPQSPQ 60
           +VKS  SR+HPLVA AAVAV LVSL+GVAA+TGLLP+S S+ +PQQ A  +    P +PQ
Sbjct: 7   IVKSQSSRLHPLVAGAAVAVILVSLIGVAAMTGLLPSSKSANSPQQLAAVEQNAGPMNPQ 66

Query: 61  QLQQAQNNQQPAPKANYA-QQAQQNSNSYGNPAPAAVARCSSCGEVQAVRAIQHTPKASG 119
           Q          AP    A QQA   S S    AP A A CSSCGEV AVRA+QHTP+ SG
Sbjct: 67  Q----------APATRLAPQQAAYPSQSA--EAPRAAAVCSSCGEVVAVRAVQHTPQTSG 114

Query: 120 VGIVAGAVLGGVLGNQIGSGNGRTLATV 147
           VGI  GAV+GG+LGNQIG GNGRTLAT+
Sbjct: 115 VGIAGGAVVGGLLGNQIGGGNGRTLATI 142


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.309    0.121    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 236,942
Number of extensions: 3985
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,255,275
Effective search space: 87869250
Effective search space used: 87869250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 126 (53.1 bits)