BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0138.0008.p
         (440 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312097|ref|YP_003776189.1| lysyl-tRNA synthetase [Herbaspi...   604   e-174
gi|300309541|ref|YP_003773633.1| aspartyl-tRNA synthetase [Herba...    63   4e-11

>gi|300312097|ref|YP_003776189.1| lysyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 513

 Score =  604 bits (1558), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 291/337 (86%), Positives = 308/337 (91%), Gaps = 3/337 (0%)

Query: 1   MTTQNDNAAQPQQPPVDENAIIAERRAKLGAIREQGVAFPNDFRPEHNAAALHAQYGELD 60
           MTTQN  AAQP     DEN+IIAERRAKL AIREQGVAFPNDFRP + AA LHA+Y   +
Sbjct: 1   MTTQNTPAAQP---AADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYDGFE 57

Query: 61  NEALEANPVKVSIAGRMMLKRVMGKASFATLQDASGPRADGRMQLYVTNDVTGEAAHAAF 120
           NEALEA PV V++AGRMMLKRVMGKA+FATLQDASG RADGR+QLY+T DVTGE A AAF
Sbjct: 58  NEALEAEPVTVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYITRDVTGEEAMAAF 117

Query: 121 KHYDLGDILGAEGTLFKTKTGELSVKVTGLRLVTKSLRPLPDKFHGLSDQETKYRQRYVD 180
           KHYDLGDILGAEGTLFKTKTGELSVKVT L+L+TKSLRPLPDKFHGL+DQE KYRQRYVD
Sbjct: 118 KHYDLGDILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVD 177

Query: 181 LIMSEETRRTFKARTAAMSSIRRFMEKNDFMEVETPMLHTIPGGAAAKPFITHHNALDMQ 240
           LIMSEETRRTFKARTAAMSSIRRFME + FMEVETPMLH IPGGAAAKPFITHHNALDMQ
Sbjct: 178 LIMSEETRRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKPFITHHNALDMQ 237

Query: 241 MFLRIAPELYLKRLVVGGFNRVFEVNRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMSF 300
           MF+RIAPELYLKRLVVGGF RVFE+NRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLM F
Sbjct: 238 MFMRIAPELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGF 297

Query: 301 TEQVIRQAAIDAHGTATLTYQGRELDLAKPFQRLTIT 337
           TEQVIRQAAIDAHGTA L+YQGRELDL+KPF RLTIT
Sbjct: 298 TEQVIRQAAIDAHGTAVLSYQGRELDLSKPFDRLTIT 334


>gi|300309541|ref|YP_003773633.1| aspartyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 599

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 29/289 (10%)

Query: 52  LHAQYGELDNEALEANPVKVSIAGRMMLKRVMGKASFATLQDASGPRADGRMQLYVTND- 110
           +  QY  L  EAL      VS+ G +  +R  G   F  L+D      +G +Q+    D 
Sbjct: 1   MRTQYCGLTTEALLGQ--TVSLCGWVHRRRDHGGVIFIDLRDR-----EGLVQVVCDPDR 53

Query: 111 ----VTGEAAHAAFKHYDLGDILG-AEGTL-FKTKTGELSVKVTGLRLVTKSLRPLPDKF 164
                  E+    F     G +    EGT     K+G++ V    L ++  S+ P P + 
Sbjct: 54  ADVFKNAESVRNEFCLRITGLVRNRPEGTTNANLKSGKIEVLCHELEVLNPSVTP-PFQL 112

Query: 165 HGLSDQET-KYRQRYVDLIMSEETRRTFKARTAAMSSIRRFMEKNDFMEVETPML-HTIP 222
              S  ET +   R +DL    + +   + R      +R+F++   F+++ETPML  + P
Sbjct: 113 DDDSLSETTRLTHRVLDL-RRPQMQNNLRLRYKVAMEVRKFLDAQGFIDIETPMLTKSTP 171

Query: 223 GGAAAKPFITHHNALDMQMFLRIAPELYLKRLVVGGFNRVFEVNRNFRNEGVSPRHNPEF 282
            GA      +  NA +    L  +P+L+ + L+V  F+R +++ + FR+E +     PEF
Sbjct: 172 EGARDYLVPSRVNAGEF-FALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEF 230

Query: 283 TMMEFYAAYVDYQWLMSFTEQVIRQAAIDAHGTATLTYQGRELDLAKPF 331
           T ++   ++++ Q +    E +IR    +A           ++DL  PF
Sbjct: 231 TQIDCETSFLNEQEIRDLFEGMIRLVFKNA----------LDIDLPNPF 269


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,202,789
Number of extensions: 43918
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 440
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 352
Effective length of database: 1,203,190
Effective search space: 423522880
Effective search space used: 423522880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)