BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0138.0007.p
         (76 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312096|ref|YP_003776188.1| peptide chain release factor 2 ...   150   2e-38

>gi|300312096|ref|YP_003776188.1| peptide chain release factor 2
           [Herbaspirillum seropedicae SmR1]
          Length = 337

 Score =  150 bits (379), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 74/76 (97%)

Query: 1   MLRAKLFELELRKRMSEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNFEMGNTKAVL 60
           MLRAKLFELELRKRMSEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNFE GNTKAVL
Sbjct: 262 MLRAKLFELELRKRMSEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNFETGNTKAVL 321

Query: 61  DGDLDGFIAASLKQGV 76
           DGD+D FIAASLKQGV
Sbjct: 322 DGDIDDFIAASLKQGV 337


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 203,926
Number of extensions: 6184
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 76
Length of database: 1,619,870
Length adjustment: 47
Effective length of query: 29
Effective length of database: 1,397,325
Effective search space: 40522425
Effective search space used: 40522425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)