BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0138.0001.p (168 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 104 3e-24 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 87 1e-18 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 64 7e-12 gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump pr... 59 2e-10 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 59 3e-10 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 104 bits (260), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 65/138 (47%), Positives = 82/138 (59%), Gaps = 5/138 (3%) Query: 1 VQNRLKTVEPRLPQAVRQNGLSVEASGSGFLMLVGLTSPSGKFDEMALGDYMARNVVDEL 60 VQN+LK +E RLPQ VRQNG++VE++ S FL++V LTS G++DE+ L DY+ARN+V+EL Sbjct: 107 VQNKLKAIEARLPQTVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEEL 166 Query: 61 RRIGGVGRVQXKGAG---RRAGDGLHLVAVGLPAGR-RPGLFHDLHPAAVGRHRRAHARR 116 RR+ GVGRVQ GA R D L A GL + A GR A A R Sbjct: 167 RRMEGVGRVQLFGAEQAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVR 226 Query: 117 GQGVRTPSGVTAGDRQQP 134 GQ + P V G Q P Sbjct: 227 GQQIAMPLTVQ-GQLQSP 243 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 86.7 bits (213), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 42/76 (55%), Positives = 55/76 (72%) Query: 1 VQNRLKTVEPRLPQAVRQNGLSVEASGSGFLMLVGLTSPSGKFDEMALGDYMARNVVDEL 60 VQNRLK VE RLP AV Q G+ V S S FL+ +GL+S GK D +ALGDY++RNV++E+ Sbjct: 107 VQNRLKRVEARLPAAVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEI 166 Query: 61 RRIGGVGRVQXKGAGR 76 +R+ GVG+ Q G R Sbjct: 167 KRVPGVGQAQLFGTER 182 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 63.9 bits (154), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 47/73 (64%) Query: 1 VQNRLKTVEPRLPQAVRQNGLSVEASGSGFLMLVGLTSPSGKFDEMALGDYMARNVVDEL 60 VQN+L+ V RLPQAV+ NG++V + + LM++ LTS + + +GD+++ + D++ Sbjct: 107 VQNKLQQVTARLPQAVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQI 166 Query: 61 RRIGGVGRVQXKG 73 R+ GVG V G Sbjct: 167 SRVEGVGDVTAFG 179 >gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1071 Score = 58.9 bits (141), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 44/78 (56%) Query: 1 VQNRLKTVEPRLPQAVRQNGLSVEASGSGFLMLVGLTSPSGKFDEMALGDYMARNVVDEL 60 VQNR+ PRLP+ V++ G++ S M+V LTSP ++D L +Y NV D L Sbjct: 109 VQNRVSQALPRLPEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRL 168 Query: 61 RRIGGVGRVQXKGAGRRA 78 RI GVG V G+G A Sbjct: 169 ARIQGVGEVGLFGSGNYA 186 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 58.5 bits (140), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 40/74 (54%) Query: 1 VQNRLKTVEPRLPQAVRQNGLSVEASGSGFLMLVGLTSPSGKFDEMALGDYMARNVVDEL 60 VQN+L P LP V+Q G++V S + FL ++ TS G L DY+A NV D + Sbjct: 107 VQNKLSLATPLLPSEVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAI 166 Query: 61 RRIGGVGRVQXKGA 74 R+ GVG G+ Sbjct: 167 SRVEGVGDTTLFGS 180 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.140 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 549,853 Number of extensions: 22938 Number of successful extensions: 70 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 70 Number of HSP's successfully gapped: 5 Length of query: 168 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 89 Effective length of database: 1,245,805 Effective search space: 110876645 Effective search space used: 110876645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)