BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0003.p
         (91 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313555|ref|YP_003777647.1| septum formation inhibitor prot...    95   1e-21

>gi|300313555|ref|YP_003777647.1| septum formation inhibitor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 264

 Score = 94.7 bits (234), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 51/61 (83%)

Query: 29  ALDKALXRARARIFAASLEAELVSIAGVYRTFENGHPPELAQKQVQVRLTGDRIDVLPIN 88
           AL  A     ARIFAASLEAELVSIAGVYRTFENGH PELA KQVQVRL G+RIDVLP++
Sbjct: 203 ALAGASGNTAARIFAASLEAELVSIAGVYRTFENGHAPELAGKQVQVRLQGERIDVLPMS 262

Query: 89  T 89
           +
Sbjct: 263 S 263



 Score = 61.2 bits (147), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 33/34 (97%)

Query: 1  MQKARKPIDIKISTVVAISAILHETDPAALDKAL 34
          MQKARKPI+IKISTVVAISAILHETDP +L++AL
Sbjct: 1  MQKARKPIEIKISTVVAISAILHETDPTSLEQAL 34


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 205,616
Number of extensions: 4796
Number of successful extensions: 18
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 2
Length of query: 91
Length of database: 1,619,870
Length adjustment: 61
Effective length of query: 30
Effective length of database: 1,331,035
Effective search space: 39931050
Effective search space used: 39931050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)