BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0002.p
         (142 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313552|ref|YP_003777644.1| ABC transporter periplasmic/sur...   210   5e-56
gi|300310744|ref|YP_003774836.1| ABC transporter periplasmic/sur...    96   9e-22

>gi|300313552|ref|YP_003777644.1| ABC transporter
           periplasmic/surface lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 379

 Score =  210 bits (534), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 100/105 (95%), Positives = 103/105 (98%)

Query: 1   VMRQLATDGNKLIFGTTFGYMEAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAY 60
           V RQLATDGNKLIFGTTFGYMEAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAY
Sbjct: 100 VFRQLATDGNKLIFGTTFGYMEAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAY 159

Query: 61  LAGVVAGKMSKSGKLGVVASVPIPEVVRNIDAFTLGARSINPKIT 105
           LAGVVAGKMSKSGKLGVVASVPIPEV+RNID+FTLGARS+NPK T
Sbjct: 160 LAGVVAGKMSKSGKLGVVASVPIPEVIRNIDSFTLGARSVNPKAT 204


>gi|300310744|ref|YP_003774836.1| ABC transporter
           periplasmic/surface lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 365

 Score = 96.3 bits (238), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 71/106 (66%), Gaps = 5/106 (4%)

Query: 5   LATDGNKLIFGTTFGYME-AMLKVAKEFPDVKFEHATGFKTAD----NLAQYDVRTYEGA 59
           +  DG  L+F T+FGY +  +LK+A+++P V+  H  G  TA     N+  Y     E  
Sbjct: 84  IQQDGATLLFPTSFGYFDPHVLKIAEKYPKVRIAHCGGLWTAGKHPMNVGSYFGYIEECE 143

Query: 60  YLAGVVAGKMSKSGKLGVVASVPIPEVVRNIDAFTLGARSINPKIT 105
           YL+GVVAG MSKS KL  +A+ PIP+V+RNI+AFTLGA+S++P IT
Sbjct: 144 YLSGVVAGYMSKSKKLAFIAAKPIPQVLRNINAFTLGAQSVDPAIT 189


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 329,246
Number of extensions: 12116
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 2
Length of query: 142
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 66
Effective length of database: 1,260,010
Effective search space: 83160660
Effective search space used: 83160660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)