BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0001.p
         (528 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313552|ref|YP_003777644.1| ABC transporter periplasmic/sur...   339   4e-94
gi|300313550|ref|YP_003777642.1| ABC transporter permease [Herba...   238   1e-63
gi|300310744|ref|YP_003774836.1| ABC transporter periplasmic/sur...    94   2e-20

>gi|300313552|ref|YP_003777644.1| ABC transporter
           periplasmic/surface lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 379

 Score =  339 bits (869), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 160/176 (90%), Positives = 166/176 (94%)

Query: 296 AQXRVVWVNKWFDPGKEREAATTLIGQGVDVLMQNTDSAAVVQTAQEKGVYAFGWDSDMT 355
           A   VVWVNKWFDPGKEREAATTLIGQGVDVLMQNTDSAAVVQTAQEKGVYAFGWDSDMT
Sbjct: 203 ATTAVVWVNKWFDPGKEREAATTLIGQGVDVLMQNTDSAAVVQTAQEKGVYAFGWDSDMT 262

Query: 356 SFGPKAHLAASMINWGVYYTARVQAVLDGSWKSSTTWLGLKENGIDLGGFNPELPADVKA 415
           SFGPKAHLAAS+INWGVYYTARVQAVLDGSWKSST+W+GLKENGIDL  FNPELPADVK 
Sbjct: 263 SFGPKAHLAASVINWGVYYTARVQAVLDGSWKSSTSWIGLKENGIDLAAFNPELPADVKT 322

Query: 416 LVEERKKGIADGSAPIWKGPIKDNTGKEQVAKDAVADDGFLHGVKFYVEGVEGKVP 471
           LVEERKKGI DGSAPIWKGPIKDN GKE + KDAVADDGFLHG+KFYVEGV+GKVP
Sbjct: 323 LVEERKKGIVDGSAPIWKGPIKDNAGKEVLGKDAVADDGFLHGIKFYVEGVDGKVP 378


>gi|300313550|ref|YP_003777642.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score =  238 bits (606), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 119/144 (82%), Positives = 130/144 (90%), Gaps = 1/144 (0%)

Query: 42  VIGGAFWAAITALLRDKFNANEILVSLMLTYVAQLLLMYAVNGPLKDPNGMNFPQSKVFS 101
           VIGGA WAAITA LRD+FNANEILVSLMLTYVAQLLLM+AVNGPLKDPNGMNFPQSKVFS
Sbjct: 135 VIGGALWAAITAFLRDQFNANEILVSLMLTYVAQLLLMWAVNGPLKDPNGMNFPQSKVFS 194

Query: 102 GEFMLPMLMSGTRLHVGFAITLAAAVVMAVFMMRSFRGFSLMVGGVAPHAARYAGFSSRN 161
            EFMLP L+SGTRLH+GFA+ + AAV+MA+FMMRS RGFSLMVGGVAPHAARYAGFS+R+
Sbjct: 195 SEFMLPTLISGTRLHIGFAVAIVAAVLMAIFMMRSLRGFSLMVGGVAPHAARYAGFSARS 254

Query: 162 ALWVSLLISGGFAEXLARGRRVAG 185
           ALWVSLLISG FA  LA    +AG
Sbjct: 255 ALWVSLLISGAFA-GLAGAFEIAG 277


>gi|300310744|ref|YP_003774836.1| ABC transporter
           periplasmic/surface lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 365

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 3/175 (1%)

Query: 299 RVVWVNKWFDPGKEREAATTLIGQGVDVLMQNTDS-AAVVQTAQEKGVYAFGWDSDMTSF 357
            V++   W  P KE EAA +LI QG DV+  + D    +V+TA+++GV   G+ +   S 
Sbjct: 191 HVIFTGDWSLPVKEAEAANSLIDQGCDVITCHVDGPKVIVETAEKRGVMTTGYHASQASL 250

Query: 358 GPKAHLAASMINWGVYYTARVQAVLDGSWKSSTTWLGLKENGIDLGGFNPELPADVKALV 417
            PK +L  +  NW   YT  V+A L+G    +    GLK+N + +  +   + A  K   
Sbjct: 251 APKGYLTGAEWNWATPYTEIVKATLEGKPMINFLRGGLKDNFVKMSPYGAAVSAPAKKKA 310

Query: 418 EERKKGIADGSAPIWKGPIKDNTGKEQV--AKDAVADDGFLHGVKFYVEGVEGKV 470
           +E K  +  G   I+KGPIKDN G   +      V  D  L  + + V GV G+V
Sbjct: 311 DEIKAQMLAGKFQIFKGPIKDNKGNTVIPAGTTQVQTDVVLEKMNYLVAGVVGQV 365


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,392,458
Number of extensions: 53187
Number of successful extensions: 202
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 3
Length of query: 528
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 438
Effective length of database: 1,193,720
Effective search space: 522849360
Effective search space used: 522849360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)