BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0136.0048.p
         (90 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311416|ref|YP_003775508.1| gluconate transporter family pr...   133   3e-33
gi|300310424|ref|YP_003774516.1| high-affinity gluconate permeas...    79   6e-17
gi|300311081|ref|YP_003775173.1| high-affinity gluconate transpo...    75   1e-15

>gi|300311416|ref|YP_003775508.1| gluconate transporter family
           protein [Herbaspirillum seropedicae SmR1]
          Length = 456

 Score =  133 bits (334), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 62/71 (87%), Positives = 68/71 (95%)

Query: 1   VASLSGTHNALMALAIGAGSVFFCHVNDAGFWMVKEYFGLDLKQTFATWSVIQTIVSVVG 60
           VA LS THN+LMALAIGAGSVFFCHVNDAGFWMVKEYFGL+LKQT ATWSVIQT+VSV+G
Sbjct: 385 VAGLSATHNSLMALAIGAGSVFFCHVNDAGFWMVKEYFGLNLKQTLATWSVIQTLVSVIG 444

Query: 61  LGMTLLLWGVL 71
           LGMTL+LWG+L
Sbjct: 445 LGMTLVLWGLL 455


>gi|300310424|ref|YP_003774516.1| high-affinity gluconate permease
           [Herbaspirillum seropedicae SmR1]
          Length = 450

 Score = 79.0 bits (193), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 50/67 (74%)

Query: 1   VASLSGTHNALMALAIGAGSVFFCHVNDAGFWMVKEYFGLDLKQTFATWSVIQTIVSVVG 60
           VA + GT+  L+ LA GAGS+   HVNDAGFW+VKEYF + + +TF TW+V++T++SVV 
Sbjct: 380 VALIPGTNKELLVLATGAGSLILSHVNDAGFWLVKEYFNMSVGETFKTWTVMETLISVVA 439

Query: 61  LGMTLLL 67
           +   +LL
Sbjct: 440 IIFIMLL 446


>gi|300311081|ref|YP_003775173.1| high-affinity gluconate
           transporter (GNT-III system) transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 450

 Score = 75.1 bits (183), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query: 1   VASLSGTHNALMALAIGAGSVFFCHVNDAGFWMVKEYFGLDLKQTFATWSVIQTIVSV 58
           V+++ G    LM LA GAGS+   HVND GFW+VKEYF + + QTF TW+V++T+VSV
Sbjct: 380 VSTVGGVRPELMVLATGAGSLILSHVNDGGFWLVKEYFNMTVPQTFKTWTVMETLVSV 437


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.140    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 235,018
Number of extensions: 7235
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 3
Length of query: 90
Length of database: 1,619,870
Length adjustment: 60
Effective length of query: 30
Effective length of database: 1,335,770
Effective search space: 40073100
Effective search space used: 40073100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 123 (52.0 bits)