BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0136.0046.p
         (222 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311416|ref|YP_003775508.1| gluconate transporter family pr...   256   1e-69
gi|300310424|ref|YP_003774516.1| high-affinity gluconate permeas...   138   5e-34
gi|300311081|ref|YP_003775173.1| high-affinity gluconate transpo...   127   9e-31

>gi|300311416|ref|YP_003775508.1| gluconate transporter family
           protein [Herbaspirillum seropedicae SmR1]
          Length = 456

 Score =  256 bits (654), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 131/162 (80%), Positives = 148/162 (91%), Gaps = 1/162 (0%)

Query: 1   MADSGAADKIVTTLLRYARGAAIPWMMALVALVVGLPLFFEVGLVMMAPIIFVMARRSQQ 60
           MA+SGAAD+IV TLLRYARG+ IPWMMALVALVVGLPLFFEVGLVMMAPIIFVMARRS+ 
Sbjct: 89  MAESGAADRIVNTLLRYARGSFIPWMMALVALVVGLPLFFEVGLVMMAPIIFVMARRSEL 148

Query: 61  PILRVAIPALAGMTTLHALLPPHPGPLIAVSALHADLGTTMLLGFVVAIPAVILAGPLYG 120
           PI+RVAIPALAGMTTLHALLPPHPGPLIAVSALHADLGTTMLLGF+VAIPAVI+AGPLYG
Sbjct: 149 PIMRVAIPALAGMTTLHALLPPHPGPLIAVSALHADLGTTMLLGFIVAIPAVIIAGPLYG 208

Query: 121 MWLAPRMPIGEPEQIGALFKGQQAPEMQPGFLPSLITILLPV 162
            ++APR+ + EP+QIG LF  ++  + QP FL +L+TILLPV
Sbjct: 209 NFIAPRLNLAEPDQIGKLFSAREG-QSQPSFLVALVTILLPV 249


>gi|300310424|ref|YP_003774516.1| high-affinity gluconate permease
           [Herbaspirillum seropedicae SmR1]
          Length = 450

 Score =  138 bits (347), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 107/162 (66%)

Query: 1   MADSGAADKIVTTLLRYARGAAIPWMMALVALVVGLPLFFEVGLVMMAPIIFVMARRSQQ 60
           MA+SG AD+I  TL+R      + W M + A +VG+PLFFE+G V++ P++F++ARRS  
Sbjct: 83  MAESGGADQIAQTLVRAFGRERVHWAMMMGAFLVGIPLFFEIGFVLLIPLVFIVARRSGV 142

Query: 61  PILRVAIPALAGMTTLHALLPPHPGPLIAVSALHADLGTTMLLGFVVAIPAVILAGPLYG 120
           P+ ++ +P LA ++ +H L+PPHPGPL+A+    AD+G T+  G +V +P VI+AGP++G
Sbjct: 143 PLFKIGMPMLASLSVMHGLVPPHPGPLLAIGIFGADIGKTIFYGLLVGLPTVIIAGPMFG 202

Query: 121 MWLAPRMPIGEPEQIGALFKGQQAPEMQPGFLPSLITILLPV 162
            +++  + I   E++ A    +      PGF  +LIT+L PV
Sbjct: 203 AFISRYVDIKPSEELMAQLVREPQTTKLPGFATTLITVLAPV 244


>gi|300311081|ref|YP_003775173.1| high-affinity gluconate
           transporter (GNT-III system) transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 450

 Score =  127 bits (318), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 104/171 (60%), Gaps = 3/171 (1%)

Query: 1   MADSGAADKIVTTLLRYARGAAIPWMMALVALVVGLPLFFEVGLVMMAPIIFVMARRSQQ 60
           MA+SG A++I  T+++      + W M  VA +VGLP+FFEVG V++ PI F +A+R+  
Sbjct: 82  MAESGGAERIANTMIKAFGEKNVHWAMMTVAFIVGLPVFFEVGFVLLVPIAFNVAKRTGT 141

Query: 61  PILRVAIPALAGMTTLHALLPPHPGPLIAVSALHADLGTTMLLGFVVAIPAVILAGPLYG 120
            ++ V IP +AG++ +H L+PPHP  L+AV+A  AD+G T+L   +V IP  I+AGP++G
Sbjct: 142 NMVLVGIPMVAGLSVVHGLIPPHPAALLAVTAYSADIGRTILYALIVGIPTAIIAGPIFG 201

Query: 121 MWLAPRMPIGEPEQ--IGALFKGQQAPEMQPGFLPSLITILLPVXFFKSGT 169
             L  ++ I  P+   I       +     PGF  +L TILLPV     G+
Sbjct: 202 K-LISKVVIPNPDNPLISQFVDEGKKDRELPGFGITLFTILLPVALMLIGS 251


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 728,300
Number of extensions: 31015
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 3
Length of query: 222
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,231,600
Effective search space: 172424000
Effective search space used: 172424000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)