BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0136.0037.p
         (176 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311423|ref|YP_003775515.1| NodT family protein [Herbaspiri...   248   2e-67
gi|300312564|ref|YP_003776656.1| outer membrane multidrug resist...    82   2e-17
gi|300312015|ref|YP_003776107.1| NodT family protein [Herbaspiri...    74   8e-15

>gi|300311423|ref|YP_003775515.1| NodT family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 487

 Score =  248 bits (633), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 142/156 (91%)

Query: 11  LDAAVGRKDWSDNVYYGASFRDKLTWNNTAVLSLSYNLDLWDRNRNTTERAQDELHAVAA 70
           LD +VGRKDWSDNVYYGA+FR+KLTWNNTA L LSYN+DLWDRN+N T RAQDE+HAVAA
Sbjct: 112 LDVSVGRKDWSDNVYYGAAFRNKLTWNNTATLGLSYNVDLWDRNKNATLRAQDEMHAVAA 171

Query: 71  DARAAQLELESNVVRTYIQLSLQYGLLDSTVDTLKQEQQILDLANRRFKGGIGTQMEITQ 130
           DARAAQL+LE NVVRTY+QL+LQYGLLD+T   LK+EQ+ILDLA+RRFKGG+GTQ+EITQ
Sbjct: 172 DARAAQLDLEGNVVRTYVQLALQYGLLDNTEALLKEEQKILDLAHRRFKGGLGTQLEITQ 231

Query: 131 AEVPLPETRRQIEVFNENIALTRNQLAALLGEGPGA 166
           AE PLPETRRQIE  +ENIAL RNQLAALLG GPGA
Sbjct: 232 AESPLPETRRQIEALHENIALIRNQLAALLGAGPGA 267


>gi|300312564|ref|YP_003776656.1| outer membrane multidrug
           resistance lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 515

 Score = 82.0 bits (201), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 2/131 (1%)

Query: 36  WNNT--AVLSLSYNLDLWDRNRNTTERAQDELHAVAADARAAQLELESNVVRTYIQLSLQ 93
           +NN   A L  SY +D W +NR     A  EL A  ADA  A++ L +++   Y +L+  
Sbjct: 153 YNNATRATLDFSYEIDFWGKNRAALAAATSELEASRADAAQARITLATSIASAYAELAQL 212

Query: 94  YGLLDSTVDTLKQEQQILDLANRRFKGGIGTQMEITQAEVPLPETRRQIEVFNENIALTR 153
           Y   D+    LK   + LDL N+RF  G+ T+  + Q E      +  ++  +E+I L R
Sbjct: 213 YAQRDTNEAALKVRVESLDLFNQRFTNGLETRGSVKQMEARRAIAQADLKATDESIGLQR 272

Query: 154 NQLAALLGEGP 164
           N+LAALLG GP
Sbjct: 273 NKLAALLGAGP 283


>gi|300312015|ref|YP_003776107.1| NodT family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 495

 Score = 73.9 bits (180), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 73/153 (47%)

Query: 12  DAAVGRKDWSDNVYYGASFRDKLTWNNTAVLSLSYNLDLWDRNRNTTERAQDELHAVAAD 71
           +A+V R  +S    Y   +         A L++ Y LDLW++N+    +A     A  A 
Sbjct: 121 EASVTRNQFSSTTIYPPPYGGNWYNEKKAGLNVGYELDLWNKNQAALAQAISSEKAAQAS 180

Query: 72  ARAAQLELESNVVRTYIQLSLQYGLLDSTVDTLKQEQQILDLANRRFKGGIGTQMEITQA 131
            + A+L L +++V  Y QL+ QY L D    T+ Q   +  +   R + G+ +Q+E  Q+
Sbjct: 181 EQEARLALTASIVTVYSQLAAQYALHDILQSTVDQRTSLEKITAERLRTGLDSQIERDQS 240

Query: 132 EVPLPETRRQIEVFNENIALTRNQLAALLGEGP 164
                + R Q+      I L R QL AL G+GP
Sbjct: 241 RTSSADARAQLAQSEGQIVLLRQQLGALAGKGP 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 519,590
Number of extensions: 18877
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 4
Length of query: 176
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,245,805
Effective search space: 120843085
Effective search space used: 120843085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)