BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0136.0036.p (234 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311424|ref|YP_003775516.1| LysR family transcription regul... 298 3e-82 gi|300311458|ref|YP_003775550.1| LysR family transcription regul... 162 3e-41 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 150 6e-38 gi|300309660|ref|YP_003773752.1| LysR family transcription regul... 130 1e-31 gi|300313922|ref|YP_003778014.1| LysR family transcription regul... 130 1e-31 >gi|300311424|ref|YP_003775516.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 298 bits (762), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 152/190 (80%), Positives = 169/190 (88%), Gaps = 2/190 (1%) Query: 1 MDTLQNMRIFMRVVDAGSFTLAAQQMELTTAHVSRAVADLERRLRTRLLNRTTRRIALTE 60 MDTLQNMR+F RVV+AGSFT AAQQM LTTAHVSRAVADLER LRTRL+NRTTRRIALTE Sbjct: 2 MDTLQNMRVFARVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTE 61 Query: 61 AGERYLLRCEQIVSYVREAEAEASDAYVRPSGRLRIHTMTSFGQRYVIPAVSSYQKRYPD 120 AGERYLLRC+QI+SYV EAEAEAS AYV+PSGRLRIH MTSFGQRYVIP++S Y KRYPD Sbjct: 62 AGERYLLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPD 121 Query: 121 VAIELTLAQRVPDLLEEGFDVSLVLARELPDSGLIFRQLSSIYSILCASPLYLEKRGAP- 179 VA+ELTLAQR+PD+LEEG+DVSLVLARELPDSGLI+RQL S +S+LCASP YL+K GAP Sbjct: 122 VAVELTLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGSTFSMLCASPAYLDKYGAPQ 181 Query: 180 -PXSKSRRSC 188 P +C Sbjct: 182 QPADLLNHAC 191 >gi|300311458|ref|YP_003775550.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 162 bits (409), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 84/190 (44%), Positives = 125/190 (65%), Gaps = 2/190 (1%) Query: 1 MDTLQNMRIFMRVVDAGSFTLAAQQMELTTAHVSRAVADLERRLRTRLLNRTTRRIALTE 60 MD LQ+MR+F +VV+ GSF AA+ ++++ A +R +ADLE L TRLLNR+TRR++LTE Sbjct: 1 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60 Query: 61 AGERYLLRCEQIVSYVREAEAEASDAYVRPSGRLRIHTMTSFGQRYVIPAVSSYQKRYPD 120 AG+ YL R I++ V +AEA S RP+G L I+ FGQ + +S+Y + YP+ Sbjct: 61 AGQAYLERVRMILAEVDDAEALVSLETKRPAGTLAIYCNAGFGQSQLGEMLSAYSQAYPE 120 Query: 121 VAIELTLAQRVPDLLEEGFDVSLVLARELPDSGLIFRQLSSIYSILCASPLYLEKRGAP- 179 VA++++L++R DL+EEG D+ + + D+ +I RQL ILC SP Y+ ++GAP Sbjct: 121 VALDISLSERSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVARVILCTSPAYIARQGAPE 180 Query: 180 -PXSKSRRSC 188 P SR +C Sbjct: 181 QPEDLSRHNC 190 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 150 bits (380), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 140/229 (61%), Gaps = 10/229 (4%) Query: 1 MDTLQNMRIFMRVVDAGSFTLAAQQMELTTAHVSRAVADLERRLRTRLLNRTTRRIALTE 60 M+ L+ + F+ V D GSF AA+ + ++ A VSR V +LE RL +RL+ RTTRR++LTE Sbjct: 1 MNKLREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 Query: 61 AGERYLLRCEQIVSYVREAEAEASDAYVRPSGRLRIHTMTSFGQRYVIPAVSSYQKRYPD 120 AG YL RC+QIV+ + EA+ S +P+G LRI+ +FG ++ P + +R+P+ Sbjct: 61 AGALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPE 120 Query: 121 VAIELTLAQRVPDLLEEGFDVSLVLARELPDSGLIFRQLSSIYSILCASPLYLEKRGAP- 179 +++++TL+ R+ D+++EG+D+++ +AR L DS L+ R+L+S +CASP YL+ G P Sbjct: 121 ISLDITLSDRIVDIIDEGYDMAIRIAR-LSDSTLVHRKLTSTSLHVCASPAYLDAHGTPA 179 Query: 180 -PXSKSRRSCSITVACSWSARCRRWT----NGRCKVRTAGKWSPSNPTS 223 P ++ T++ S++ W G VR + + +N S Sbjct: 180 HPHELAQHQ---TISYSYNQSKDEWQFNGPEGPVSVRVSSRLHVNNGDS 225 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 130 bits (327), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 103/179 (57%), Gaps = 1/179 (0%) Query: 1 MDTLQNMRIFMRVVDAGSFTLAAQQMELTTAHVSRAVADLERRLRTRLLNRTTRRIALTE 60 MD Q M++F VVDA SFT AA + L V+ V LE L+ RLLNRTTRRI+LT Sbjct: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTP 60 Query: 61 AGERYLLRCEQIVSYVREAEAEASDAYVRPSGRLRIHTMTSFGQRYVIPAVSSYQKRYPD 120 G Y RC +I++ + E E + P GRLRI S G+ ++P + + RYPD Sbjct: 61 DGAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPD 120 Query: 121 VAIELTLAQRVPDLLEEGFDVSLVLARELPDSGLIFRQLSSIYSILCASPLYLEKRGAP 179 + + + + R DL++E D + + EL DS ++ R++ + ++ CA+P YLE+ G P Sbjct: 121 IELMMGMGDRPVDLVQEAVDCVIRIG-ELQDSSMVARRIGTFQTVTCAAPAYLERHGVP 178 >gi|300313922|ref|YP_003778014.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 130 bits (326), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 107/179 (59%), Gaps = 1/179 (0%) Query: 1 MDTLQNMRIFMRVVDAGSFTLAAQQMELTTAHVSRAVADLERRLRTRLLNRTTRRIALTE 60 MD L M++F+ VVD+GS + AA+Q++L+ VSR VA+LE + RLL+RTTRR++LT Sbjct: 1 MDRLMAMQVFVTVVDSGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTP 60 Query: 61 AGERYLLRCEQIVSYVREAEAEASDAYVRPSGRLRIHTMTSFGQRYVIPAVSSYQKRYPD 120 AG L RC Q++ Y + P G LRI TSF Q +I AV Y +RYP Sbjct: 61 AGNELLPRCRQMLEYSEDMRHALDAPDETPRGLLRITASTSFAQTQLIQAVVEYGRRYPG 120 Query: 121 VAIELTLAQRVPDLLEEGFDVSLVLARELPDSGLIFRQLSSIYSILCASPLYLEKRGAP 179 VA++L R +L+EE D+++ + L + LI R L SI+CA+P YL + G P Sbjct: 121 VAVDLLALDRTVNLVEERIDLAIRMTNRL-EPNLIARPLGVCRSIICATPDYLARHGLP 178 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.131 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 565,098 Number of extensions: 19823 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 55 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 55 Length of query: 234 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 152 Effective length of database: 1,231,600 Effective search space: 187203200 Effective search space used: 187203200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)