BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0136.0031.p (179 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311426|ref|YP_003775518.1| ATP-dependent Clp protease subu... 296 7e-82 gi|300310731|ref|YP_003774823.1| ATP-dependent protease ATP-bind... 191 3e-50 gi|300310082|ref|YP_003774174.1| ClpA/B-type chaperone protein [... 168 2e-43 gi|300313318|ref|YP_003777410.1| ClpA/B-type chaperone ATPase [H... 165 2e-42 >gi|300311426|ref|YP_003775518.1| ATP-dependent Clp protease subunit [Herbaspirillum seropedicae SmR1] Length = 861 Score = 296 bits (758), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 147/150 (98%), Positives = 150/150 (100%) Query: 1 VLIGEPGVGKTAIVEGLAQRIVSGEVPDSLKSKRVLSLDMAALLAGAKYRGEFEERLKAV 60 VLIGEPGVGKTAIVEGLAQRIV+GEVPDSLKSKRVLSLDMAALLAGAKYRGEFEERLKAV Sbjct: 203 VLIGEPGVGKTAIVEGLAQRIVNGEVPDSLKSKRVLSLDMAALLAGAKYRGEFEERLKAV 262 Query: 61 LKEIAQDEGQTIVFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYRKY 120 LKEIAQDEGQTIVFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYR+Y Sbjct: 263 LKEIAQDEGQTIVFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYRQY 322 Query: 121 IEKDAALERRFQKIIVDEPSVEATIAILRG 150 IEKDAALERRFQKI+VDEPSVEATIAILRG Sbjct: 323 IEKDAALERRFQKILVDEPSVEATIAILRG 352 >gi|300310731|ref|YP_003774823.1| ATP-dependent protease ATP-binding specificity subunit [Herbaspirillum seropedicae SmR1] Length = 767 Score = 191 bits (485), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 98/168 (58%), Positives = 126/168 (75%), Gaps = 3/168 (1%) Query: 1 VLIGEPGVGKTAIVEGLAQRIVSGEVPDSLKSKRVLSLDMAALLAGAKYRGEFEERLKAV 60 +L+GE GVGKTAI EGLA R+ G+VP+ LK+ V SLDM ALLAG KYRG+FE+RLKAV Sbjct: 214 LLVGEAGVGKTAIAEGLAWRVTQGDVPEILKNAVVYSLDMGALLAGTKYRGDFEQRLKAV 273 Query: 61 LKEIAQDEGQTIVFIDELHTMVGAGKAE-GAMDAGNMLKPALARGELHCVGATTLDEYRK 119 LK++ +D I+FIDE+HT++GAG A G +DA N+LKPAL+ G+L C+GATT E+R Sbjct: 274 LKQL-KDSPNGILFIDEIHTIIGAGSASGGTLDASNLLKPALSSGQLKCIGATTYTEFRG 332 Query: 120 YIEKDAALERRFQKIIVDEPSVEATIAILRGKRNLESRKSHGAGQPAS 167 EKD AL RRFQKI V+EP+VE T+ ILRG ++ + + HG AS Sbjct: 333 VFEKDHALSRRFQKIDVNEPTVEQTVQILRGLKS-KFEEHHGVKYSAS 379 >gi|300310082|ref|YP_003774174.1| ClpA/B-type chaperone protein [Herbaspirillum seropedicae SmR1] Length = 893 Score = 168 bits (426), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 85/149 (57%), Positives = 104/149 (69%) Query: 1 VLIGEPGVGKTAIVEGLAQRIVSGEVPDSLKSKRVLSLDMAALLAGAKYRGEFEERLKAV 60 +L GE GVGKTA+VEGLA RI +VP +L+ + +LDM L AGA +GEFE RLK V Sbjct: 238 ILTGEAGVGKTAVVEGLALRIAQDDVPQALQGVEIHTLDMGLLQAGASVKGEFENRLKGV 297 Query: 61 LKEIAQDEGQTIVFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYRKY 120 + E+ + I+FIDE HTM+GAG G DA N+LKPALARGEL + ATT EY+KY Sbjct: 298 IDEVKKSPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKY 357 Query: 121 IEKDAALERRFQKIIVDEPSVEATIAILR 149 EKDAAL RRFQ I V+EP+ E A+LR Sbjct: 358 FEKDAALARRFQVIKVEEPTEEVACAMLR 386 >gi|300313318|ref|YP_003777410.1| ClpA/B-type chaperone ATPase [Herbaspirillum seropedicae SmR1] Length = 889 Score = 165 bits (418), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 84/150 (56%), Positives = 102/150 (68%) Query: 1 VLIGEPGVGKTAIVEGLAQRIVSGEVPDSLKSKRVLSLDMAALLAGAKYRGEFEERLKAV 60 +L GE GVGKTA+VEGLA RI G+VP L+ + +LDM L AGA +GEFE RLK V Sbjct: 234 ILTGEAGVGKTAVVEGLALRIAQGDVPKPLQGVEIHTLDMGLLQAGASVKGEFESRLKTV 293 Query: 61 LKEIAQDEGQTIVFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYRKY 120 + E+ + I+FIDE HTM+GA G DA N+LKPALARGEL + ATT EY+KY Sbjct: 294 IDEVKKSAYPIILFIDEAHTMIGAAGQAGQSDAANLLKPALARGELRTIAATTWSEYKKY 353 Query: 121 IEKDAALERRFQKIIVDEPSVEATIAILRG 150 EKDAAL RRFQ I V+EP + A+LR Sbjct: 354 FEKDAALARRFQVIKVEEPGEDVACAMLRA 383 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 571,341 Number of extensions: 23651 Number of successful extensions: 80 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 78 Number of HSP's successfully gapped: 4 Length of query: 179 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 100 Effective length of database: 1,245,805 Effective search space: 124580500 Effective search space used: 124580500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 127 (53.5 bits)