BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0136.0030.p
         (81 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311426|ref|YP_003775518.1| ATP-dependent Clp protease subu...    92   8e-21

>gi|300311426|ref|YP_003775518.1| ATP-dependent Clp protease subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 861

 Score = 92.0 bits (227), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 52/58 (89%), Gaps = 1/58 (1%)

Query: 1   MDEATRKSDWQKVSELKYGKLAELEKALETQNKQDAASEQTVGKPRLVRTQVGAEEIA 58
           M+EATRKSDWQKVSELKYGKLAELE ALE QNK+DAA  +T  KP+LVRTQVGAEEIA
Sbjct: 486 MEEATRKSDWQKVSELKYGKLAELEAALEVQNKKDAAGVKT-EKPKLVRTQVGAEEIA 542


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 228,191
Number of extensions: 6782
Number of successful extensions: 10
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 81
Length of database: 1,619,870
Length adjustment: 52
Effective length of query: 29
Effective length of database: 1,373,650
Effective search space: 39835850
Effective search space used: 39835850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 123 (52.0 bits)