BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0136.0023.p
         (293 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309895|ref|YP_003773987.1| methionine synthase II protein ...    95   6e-21

>gi|300309895|ref|YP_003773987.1| methionine synthase II protein
           [Herbaspirillum seropedicae SmR1]
          Length = 342

 Score = 95.1 bits (235), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 125/280 (44%), Gaps = 33/280 (11%)

Query: 1   VERQEQLGLDVLVHGEPERNDMVEYFGEQLWGYAFSANGWVQSYGSRCVKPPFIYGDVYR 60
           ++ Q+  G+D++  GE  R   V  F E L G  F+    V+         P + G V R
Sbjct: 48  LQEQQHAGIDIVSDGEQTRQHFVTTFIEHLDGVDFAKRETVRIRNRYDASVPTVVGAVSR 107

Query: 61  PEAMTVGWSQFAQSLTQKPMKGMLTGPVTMLQWSFVRDDQPRSTTALQIALALRDEVCDL 120
           P+ + V  ++F +S T +P+K  L GP+TM+   +    + R   A + A  L  E  +L
Sbjct: 108 PKPVFVDDARFLRSQTDQPIKWALPGPMTMIDTLYDSHYKSREKLAWEFATLLNQEAREL 167

Query: 121 EKAGIGMIQIDEPAFREGLPLKAGDWKEYLDWAVRAFRISAAGVKDETQIHTHMCYS--- 177
           E AG+ +IQ DEPAF          + E  DW V     +  G+K ET +  H+CY    
Sbjct: 168 EAAGVDIIQFDEPAFNVF-------FDEVNDWGVATLERAIEGLKCETAV--HICYGYGI 218

Query: 178 ---------------EFNDILPWIAAMDADVITIE--TSRSGMELLDGFGRFQYPNDIGP 220
                          ++ +  P + A   D++++E   +R  M+L++          +  
Sbjct: 219 KANTDWKKTLGSEWRQYEETFPRLQASSIDIVSLECHNARVPMDLIE----LIRGKKVMV 274

Query: 221 GVYDIHSPRIPQAGDMVRLMEKARGVIPDERLWINPDCGL 260
           G  D+ +  +  A ++   + +A   +  ++L+   +CG+
Sbjct: 275 GAIDVANHGVESAEEVAATLRRALQFVEADKLYPCTNCGM 314


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,015,515
Number of extensions: 44060
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 209
Effective length of database: 1,222,130
Effective search space: 255425170
Effective search space used: 255425170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)