BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0136.0018.p
         (308 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311430|ref|YP_003775522.1| isocitrate lyase [Herbaspirillu...   553   e-159
gi|300312420|ref|YP_003776512.1| carboxyphosphonoenolpyruvate ph...    69   6e-13

>gi|300311430|ref|YP_003775522.1| isocitrate lyase [Herbaspirillum
           seropedicae SmR1]
          Length = 434

 Score =  553 bits (1424), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 265/291 (91%), Positives = 276/291 (94%), Gaps = 1/291 (0%)

Query: 1   MYPDQSLYPANSVPMVVKRINNTFQRADQIQWSEGKNDIDFFAPIVADAEAGFGGVLNAY 60
           MYPDQSLYPANSVPMVVKRINNTF RADQIQWSEGK+DIDFFAPIVADAEAGFGGVLNA+
Sbjct: 103 MYPDQSLYPANSVPMVVKRINNTFARADQIQWSEGKDDIDFFAPIVADAEAGFGGVLNAF 162

Query: 61  ELMKSMIDAGAAGVHFEDQLASVKKCGHMGGKVLVPTREAVEKLNAARLAADVSGTTTLV 120
           ELMKSMI+AGAAGVHFEDQLASVKKCGHMGGKVLVPTREAVEKLNAARLAADV GT TLV
Sbjct: 163 ELMKSMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTREAVEKLNAARLAADVMGTKTLV 222

Query: 121 IARTDAEAADLLTSDVDDNDKPFLTGERTVEGFFKTRPGINQAISRGLAYAEYADLVWCE 180
           IARTDAEAADLLTSDVD NDKPFL+GERTVEGFFKT PGI+QAISRGLAYAEYAD+VWCE
Sbjct: 223 IARTDAEAADLLTSDVDANDKPFLSGERTVEGFFKTHPGIDQAISRGLAYAEYADMVWCE 282

Query: 181 TGKPDLAFAKKFAEAIHAKFPGKMLSYNCSPSFNWKKNLDDATIAKFQKELGAMGYKFQF 240
           TGKPDLAFAK FAEAIHAKFPGK+L+YNCSPSFNWKKNLDDATIAKFQ+ELGAMGYKFQF
Sbjct: 283 TGKPDLAFAKTFAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQF 342

Query: 241 ITLAGFHALNYSMFNLAHGYARNQMSAFVELQEAEFAKGCEAGLRRLKQPR 291
           ITLAGFHALNYSMFNLAHGYARNQMSAFVELQEAEFA   + G   +K  R
Sbjct: 343 ITLAGFHALNYSMFNLAHGYARNQMSAFVELQEAEFAAATK-GFTAVKHQR 392


>gi|300312420|ref|YP_003776512.1| carboxyphosphonoenolpyruvate
           phosphonomutase [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score = 68.6 bits (166), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 47/222 (21%)

Query: 44  PIVADAEAGFGG-VLNAYELMKSMIDAGAAGVHFEDQLASVKKCGHMGGKVLVPTREAVE 102
           P++ D + GFG    N    +KSMI  GAA +H EDQ+ + K+CGH   K +V  +E V+
Sbjct: 81  PLLVDVDTGFGASAFNVARTVKSMIKFGAAAMHIEDQVGA-KRCGHRPNKEIVSKQEMVD 139

Query: 103 KLNAARLAADVSGTTTLVIARTDAEAADLLTSDVDDNDKPFLTGERTVEGFFKTRPGINQ 162
           ++ AA  A   +    +++ARTDA A +                            G++ 
Sbjct: 140 RIKAAVDAR--TDENFVIMARTDALAVE----------------------------GLDA 169

Query: 163 AISRGLAYAEY-ADLVWCETGKPDLAFAKKFAEAIHAKFPGKMLSYNCSPSFNWKKNLDD 221
           AI R +A  E  AD+++ E    DLA  K+FA A+       +  +  +P F        
Sbjct: 170 AIERAVACVEAGADMIFPE-AITDLAMYKQFANAVKVPILANITEFGSTPLFTV------ 222

Query: 222 ATIAKFQKELGAMGYKFQFITLAGFHALNYSMFNLAHGYARN 263
                   EL           L+ F A+N +  N+     R+
Sbjct: 223 -------DELKGADVGLVLYPLSAFRAMNKAAENVYQAIRRD 257


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 943,013
Number of extensions: 38470
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 308
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,217,395
Effective search space: 271479085
Effective search space used: 271479085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)