BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0136.0016.p
         (103 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311432|ref|YP_003775524.1| molybdate ABC transporter perme...   167   2e-43
gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permeas...    60   3e-11
gi|300310984|ref|YP_003775076.1| sulfate ABC transporter permeas...    58   1e-10

>gi|300311432|ref|YP_003775524.1| molybdate ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  167 bits (423), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/99 (85%), Positives = 90/99 (90%)

Query: 1   LLLSLKVAGWATVLNLFFGVAAAYGLSRWRSPLRDLIDSILTLPLVLPPTVLGYYLLVLF 60
           LLLSLKVAG AT+LNL  GVAAAYGLSRWRS LRD IDS+LTLPLVLPPTVLGYYLLVLF
Sbjct: 8   LLLSLKVAGLATLLNLVLGVAAAYGLSRWRSALRDFIDSVLTLPLVLPPTVLGYYLLVLF 67

Query: 61  GKRGTFGAWLSGMGIELVFTWQGAVIASTIVAFPLVLKS 99
           G+RG  GAWL  MGIELVFTWQGAV+AST+VAFPLVLKS
Sbjct: 68  GRRGALGAWLERMGIELVFTWQGAVLASTVVAFPLVLKS 106


>gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score = 60.5 bits (145), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 57/97 (58%)

Query: 3   LSLKVAGWATVLNLFFGVAAAYGLSRWRSPLRDLIDSILTLPLVLPPTVLGYYLLVLFGK 62
           L+L  A  A  LNL FGVAAA+ ++++    ++L+ +++ LP  + P + G   ++LFG 
Sbjct: 81  LTLITAAIAVPLNLVFGVAAAWAIAKFEFRGKNLLLTLIDLPFSVSPVISGLIYVLLFGL 140

Query: 63  RGTFGAWLSGMGIELVFTWQGAVIASTIVAFPLVLKS 99
           +G  G WL    I+++F   G V+A+  V FP V + 
Sbjct: 141 QGYLGPWLREHDIKILFAVPGIVLATIFVTFPFVARE 177


>gi|300310984|ref|YP_003775076.1| sulfate ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score = 58.2 bits (139), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 52/87 (59%)

Query: 14  LNLFFGVAAAYGLSRWRSPLRDLIDSILTLPLVLPPTVLGYYLLVLFGKRGTFGAWLSGM 73
           LN+ FG   A+ L R+R P + +ID+++ LP  LP  V G  L  L+ + G  G  L+ +
Sbjct: 90  LNVIFGGIVAWVLVRYRFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWLGKLLAPL 149

Query: 74  GIELVFTWQGAVIASTIVAFPLVLKSV 100
           GI++ FT  G ++A T +  P V+++V
Sbjct: 150 GIKVAFTPLGVLVALTFIGLPFVVRTV 176


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.144    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 285,681
Number of extensions: 7773
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 3
Length of query: 103
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 32
Effective length of database: 1,283,685
Effective search space: 41077920
Effective search space used: 41077920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 123 (52.0 bits)