BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0136.0015.p
         (263 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311433|ref|YP_003775525.1| molybdate ABC transporter perip...   344   5e-96
gi|300312151|ref|YP_003776243.1| molybdate ABC transporter perip...    66   3e-12

>gi|300311433|ref|YP_003775525.1| molybdate ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  344 bits (882), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 183/249 (73%), Positives = 205/249 (82%), Gaps = 1/249 (0%)

Query: 16  TTAITAVVLAALPFMAATAQATDLVVSAASSLTNAFKDLGTAFEQQNPGVKVINNFGASD 75
            TA+ A   A L   A  AQA DLVVSAA+SLTNAFK+L  +FEQQ+PGVKV++NFGASD
Sbjct: 8   NTALGAACAATLMLAAGAAQAADLVVSAAASLTNAFKELAQSFEQQHPGVKVVSNFGASD 67

Query: 76  ILMQQIVRGAPADVFASADQTAMDKAVAEKAVQVSTRRNFAANQIVLIVPGDSTLPLASL 135
           ILM+QIVRGAPADVFASADQTAMDKAVAEKAV  +TR+NFAANQIVLIV   S L   SL
Sbjct: 68  ILMRQIVRGAPADVFASADQTAMDKAVAEKAVDPATRKNFAANQIVLIVTQGSRLAPTSL 127

Query: 136 KDLTRPAVRKIALGNPASVPFGRYTRTALESAGLWDAVLAKGVMAQNVRQSLDYVARGR- 194
            DLT+P  ++IALGNPASVPFGRYTRTALE AGLW  V AKGVMA+NVR SLDYVARG  
Sbjct: 128 ADLTQPDYKRIALGNPASVPFGRYTRTALEQAGLWSQVQAKGVMAENVRTSLDYVARGEA 187

Query: 195 RGXFVFATDAAVMPDKVKVAIRIPSDTPATYPIAVTASTAQAELAAKYLAYVQSVAGQAV 254
              FVFATDAA+MP+KVKVA+R+PSD PATYPIAVTA + Q  LAA+++AYV S  GQAV
Sbjct: 188 DAGFVFATDAAIMPEKVKVALRLPSDQPATYPIAVTAGSRQPALAAQFVAYVLSPTGQAV 247

Query: 255 LARYGFLKP 263
           LARYGFLKP
Sbjct: 248 LARYGFLKP 256


>gi|300312151|ref|YP_003776243.1| molybdate ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score = 65.9 bits (159), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 2/167 (1%)

Query: 27  LPFMAATAQATDLVVSAASSLTNAFKDLGTAFEQQNPGVKVINNFGASDILMQQIVRGAP 86
           L  +     A ++ V+ A++ T  FK +  AFEQ   G KV+  FG++     QI  GAP
Sbjct: 12  LWLLMPVVHAEEVHVAVAANFTQPFKQIAAAFEQAT-GHKVVAAFGSTGQFYAQINNGAP 70

Query: 87  ADVFASADQTAMDKAVAEKAVQVSTRRNFAANQIVLIVPGDSTLPLASLKDLTRPAVRKI 146
            ++  +AD         +K     TR  +A  ++VL       +  A  + L + A   +
Sbjct: 71  FEILLAADADTPALLEKQKTAVAGTRFTYARGKLVLWSAKPGVVD-AQGEILKKGAFEHL 129

Query: 147 ALGNPASVPFGRYTRTALESAGLWDAVLAKGVMAQNVRQSLDYVARG 193
           +L NP   P+G      ++  GL +A+  K V A+NV Q+  ++A G
Sbjct: 130 SLANPKLAPYGLAGVQTMQKLGLEEALRPKIVQAENVNQAYQFIASG 176


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 700,051
Number of extensions: 25987
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 2
Length of query: 263
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 180
Effective length of database: 1,226,865
Effective search space: 220835700
Effective search space used: 220835700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)