BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0136.0014.p
         (394 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311435|ref|YP_003775527.1| chloride channel protein [Herba...   337   1e-93
gi|300310913|ref|YP_003775005.1| chloride channel EriC protein [...    72   9e-14

>gi|300311435|ref|YP_003775527.1| chloride channel protein
           [Herbaspirillum seropedicae SmR1]
          Length = 555

 Score =  337 bits (863), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 185/232 (79%), Positives = 217/232 (93%)

Query: 1   MEAVAIGDGRIPIRHTLLRSLSSLATVGSGGSIGREGPMVQLAALCASLVGRFAHFPSSR 60
           MEAVAIGDG IP+R+TLLRS+SSLA++ SGGSIGREGPMVQL+ALCASLVG+F+HFPSSR
Sbjct: 79  MEAVAIGDGAIPVRNTLLRSISSLASIASGGSIGREGPMVQLSALCASLVGKFSHFPSSR 138

Query: 61  MRLLVACGAAAGITSAYNAPIAGAFFVTEIVLGALVMESFGPVVVASVVANITMRELPGY 120
           +RLLVACGAAAGITSAYNAPIAGAFF+TEIVLG+LVMESFGPVVVASVVANITMRELPGY
Sbjct: 139 LRLLVACGAAAGITSAYNAPIAGAFFITEIVLGSLVMESFGPVVVASVVANITMRELPGY 198

Query: 121 KPAYEMPYFPEVAGVEIILFVVLGVIAGLLAPQFLRLLELSKALFRKTRLPLPLRLGLGG 180
           + AYEMPYFPE+ G E++LF+VLGV+AG+LAPQFLR+LEL K  F K RLPLP+RLG+GG
Sbjct: 199 RAAYEMPYFPEIGGWEVMLFLVLGVLAGVLAPQFLRVLELGKHGFGKLRLPLPVRLGVGG 258

Query: 181 LLVGLLSVRVPEVWGNGYSVVNSLLHTDWLWSTVLIVMIYKIVATALTTGSG 232
           LLVGL+SV+VPEVWGNGYS+VNSLLHT W+W  VL+V++ K++AT++T GSG
Sbjct: 259 LLVGLISVQVPEVWGNGYSLVNSLLHTSWVWQAVLMVLVVKVLATSITVGSG 310



 Score =  258 bits (658), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 124/182 (68%), Positives = 148/182 (81%), Gaps = 6/182 (3%)

Query: 211 WSTVLIVMIYKIVATALTTGSGXSRSLDGNSMYEITLKRHRDAAERIRLRGTHMSELIKP 270
           +  VL +M+  +VA  +      +RS+DG SMYEITLKRHRD  ER+RLRGTHMSELI+P
Sbjct: 378 YQVVLPLMLSCVVAYVV------ARSVDGRSMYEITLKRHRDNEERLRLRGTHMSELIRP 431

Query: 271 AETVLPKDAPFSEVTRIFLQYPVKYIYITDQENRYLGVVALQDVTSLLLDKDDIGTKCAG 330
           AETVL ++A   E++ +FL+YPVKY+YI D   RYLGVVALQD+TS LLDK +   + A 
Sbjct: 432 AETVLHEEASLEEISALFLKYPVKYVYIVDGRQRYLGVVALQDITSWLLDKKEAAGRVAR 491

Query: 331 DFMRTHFLHEVTPDMSLGEALQLFLDHQGERLPVISSTEDPRLLGVVFKTSLLDAYFRLD 390
           DF+R HFLHEVTPDMSLGEALQLFLDHQGERLPVI+S +DP+LLGVVFKTSLLDAYFRLD
Sbjct: 492 DFLRPHFLHEVTPDMSLGEALQLFLDHQGERLPVIASADDPQLLGVVFKTSLLDAYFRLD 551

Query: 391 RS 392
           R+
Sbjct: 552 RA 553


>gi|300310913|ref|YP_003775005.1| chloride channel EriC protein
           [Herbaspirillum seropedicae SmR1]
          Length = 572

 Score = 71.6 bits (174), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 113/238 (47%), Gaps = 9/238 (3%)

Query: 1   MEAVAIGDGRIPIRHTLLRSLSSLATVGSGGSIGREGPMVQLAALCASLVGRFAHFPSSR 60
           +EA+  G  R+  +  LL+ LSS   +GSGG  G EGP++       SL+ +  H  ++ 
Sbjct: 97  IEAILFGKSRMSPKVALLKPLSSGIVIGSGGPFGAEGPIIMTGGSIGSLLAQLLHLTAAE 156

Query: 61  MRLLVACGAAAGITSAYNAPIAGAFFVTEIVLGALVMESFGPVVVASVVANITMRELPGY 120
            + L+  GA AG+T+ +  P+A      E++L  L   S  PV +A  VA      L   
Sbjct: 157 RKTLLVAGACAGMTAIFGTPLAAVLLAVELLLFELKPRSLLPVALACAVAGFVRPWL--- 213

Query: 121 KPAYEMPYFP-EVAG---VEIILFVVLGVIAGLLAPQFLRLLELSKALFRKTRLPLPLRL 176
                 P FP +VA    V ++  +V G+ +G+LA      L   +  F + RL      
Sbjct: 214 --VEAGPLFPLDVAAPTPVALLSCLVAGLASGVLAAALTLALYRIEDGFHRLRLHWMWWP 271

Query: 177 GLGGLLVGLLSVRVPEVWGNGYSVVNSLLHTDWLWSTVLIVMIYKIVATALTTGSGXS 234
            LGG+ VGL  +  P   G GY V+  LLH   L S  L +++ K V   L  GSG S
Sbjct: 272 ALGGIAVGLGGLLQPRALGVGYDVIGDLLHQHMLLSAALALLLVKAVIWLLALGSGTS 329


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.140    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,133,207
Number of extensions: 43699
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 5
Length of query: 394
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,207,925
Effective search space: 370832975
Effective search space used: 370832975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)