BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0136.0011.p
         (443 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311437|ref|YP_003775529.1| signal transduction containing ...   685   0.0  
gi|300311452|ref|YP_003775544.1| signal transduction containing ...   120   3e-28

>gi|300311437|ref|YP_003775529.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/410 (81%), Positives = 374/410 (91%)

Query: 18  AQNFFLARQPILNREQELIGYELLFRNAAFGPANVNDDVSATASVIAHASELGLNNVIGS 77
           A +F+LARQPIL+REQ LIGYELLFR+AAFGPANV DDV+ATA+VIAHASELGL+NVIG+
Sbjct: 15  ALDFYLARQPILSREQHLIGYELLFRSAAFGPANVKDDVTATAAVIAHASELGLSNVIGN 74

Query: 78  LHGFINVDATVLMSDFINFLPADKVVLEILETVKVTPELVKRVNELVRAGYVFALDDVIA 137
           L GFINVDA VLMSDFI FLP DKVVLEILETV+VTPELV RV ELV+AGYVFALDDV+A
Sbjct: 75  LQGFINVDAAVLMSDFIYFLPNDKVVLEILETVRVTPELVVRVRELVKAGYVFALDDVVA 134

Query: 138 ESEDIAQLLPLVKIIKIDVMELDSSKLLKLSVHFKRAQKMLLAEKVETVEQFRDCVTFGF 197
           ES++I +LLPLVKIIKIDVME+D SKLLKLSVHFKRAQK LLAEKVET++QF DCVTFGF
Sbjct: 135 ESQEIEELLPLVKIIKIDVMEVDPSKLLKLSVHFKRAQKELLAEKVETLQQFNDCVTFGF 194

Query: 198 DYFQGYYFAKPVILQGKKLEASKIVIMHILTLLVRNVDNGEIVRYIKRDVALSLTLLRLV 257
           DYFQGYYFAKP+ILQGKKLEASK+VIMH+LTLLVRNVDNGEIVR+IKRDVALSLTLLRLV
Sbjct: 195 DYFQGYYFAKPMILQGKKLEASKMVIMHLLTLLVRNVDNGEIVRFIKRDVALSLTLLRLV 254

Query: 258 NTPVYGFMKHIDSLGQALIVLGRRQLKRWMQILLFANTEKDKAHTLSPLLILAATRGKML 317
           NTPVYGF K IDSLGQALIVLGRRQLKRW+QILLFANT+K++AHT+SPL+ILAATRGKML
Sbjct: 255 NTPVYGFQKFIDSLGQALIVLGRRQLKRWLQILLFANTDKEQAHTMSPLMILAATRGKML 314

Query: 318 ELITEKIRPGRRKMSEIAFTVGIMSLVDALFGMPMEAILTQITVSAEIRDALLFRTGFYG 377
           ELIT +IRPGRRKMSE+AFTVGIMSLVDALFGM ME +L QITVS EIR+ALL RTGFYG
Sbjct: 315 ELITTRIRPGRRKMSEMAFTVGIMSLVDALFGMSMETVLRQITVSTEIREALLRRTGFYG 374

Query: 378 EILQLAEATEKADKTPEQMLELLNGLQLSAEDFYEVETQAFEWGNNISTN 427
             L+L E TE+ D+   +M  LL+ LQLSA+DF+E E  AFEWGN+IS N
Sbjct: 375 VALRLVECTEQRDQDQAEMQRLLDELQLSADDFFEAEKHAFEWGNSISNN 424


>gi|300311452|ref|YP_003775544.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 399

 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 183/361 (50%), Gaps = 12/361 (3%)

Query: 67  SELGLNNVIGSLHGFINV-DATVLMSDFINFLPADKVVLEILETVKVTPELVKRVNELVR 125
           +E  L++ +G L+  I V D      +F    P  ++ L +     V P  +  ++ L  
Sbjct: 48  NEFELHDALGGLNCIIPVSDPASFAPEFREQFPQGQLALRVPVEHCVDPARIDALDWLYS 107

Query: 126 AGYVFALDDVIAESEDIAQLLPLVKIIKIDVMELDSSKLLKLSVHFKRAQKMLLAEKVET 185
            G+    D + A+    A + P V+ I   V++    KL + +      +   LAE V  
Sbjct: 108 RGFSILADGLPAQG---ASVFPFVESI---VLDASIGKLPETAQWLHGLRGPHLAENVAD 161

Query: 186 VEQFRDCVTFGFDYFQGYYFAKPVILQGKKLEASKIVIMHILTLLVRNVDNGEIVRYIKR 245
             QF  C   GF +F G Y   P     +K   S+  ++ +L L+ R+ D  E+   +K+
Sbjct: 162 AVQFDACRVQGFRWFSGDYALHPDSRLSQKNSISRARLLKLLELVARDADANELESLLKQ 221

Query: 246 DVALSLTLLRLVNTPVYGFMKHIDSLGQALIVLGRRQLKRWMQILLFANTEKDKAHTLSP 305
           D ALS  L +LV++  +GF  HI +  QA+ +LGRRQL+RW+Q+LL+A    D+  + +P
Sbjct: 222 DPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWLQLLLYARFPGDE--SANP 279

Query: 306 LLILAATRGKMLELITEKIRPGRRKMSEIAFTVGIMSLVDALFGMPMEAILTQITVSAEI 365
           LL  AA R  M+E + + I   + ++   AF  G+ SL+D L GMP+  I+  + +  +I
Sbjct: 280 LLPRAAARAAMMEAMAQCIDCTQEELDR-AFITGMFSLLDILLGMPLNDIIEPLKLPVDI 338

Query: 366 RDALLFRTGFYGEILQLAEATEKADKTPEQMLELLNGLQLSAEDFYEVETQAFEWGNNIS 425
            +AL+ R+G  G++L + E +E   + P +  + L+   L AE +     QAF W   +S
Sbjct: 339 VNALVRRSGRLGKLLDVVERSEDG-RIPLRHSD-LDAAGLDAEVYCRCLIQAFNWATRVS 396

Query: 426 T 426
           T
Sbjct: 397 T 397


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,171,472
Number of extensions: 43974
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 2
Length of query: 443
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,203,190
Effective search space: 427132450
Effective search space used: 427132450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)