BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0136.0008.p
         (453 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311441|ref|YP_003775533.1| membrane-anchored protein [Herb...   694   0.0  

>gi|300311441|ref|YP_003775533.1| membrane-anchored protein
           [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/449 (76%), Positives = 390/449 (86%), Gaps = 8/449 (1%)

Query: 1   MSIVYASLNHPQRVALAAEVHSRPFLHLSAPESLTHLAVYLRDQDGAGASTDANHHVTFQ 60
           MSIV+ASLNHPQRV LAAEVHSRPFL L+  E+LTHLAVY+R+ DG G     + H + Q
Sbjct: 1   MSIVFASLNHPQRVVLAAEVHSRPFLQLTRSETLTHLAVYVRE-DGNG-----SRHASAQ 54

Query: 61  HALLSDLCLHFGVTAPGTDAKHFFHDFGRFRLKWECHTEFASYTFAQSHDAALTTDEAFA 120
           HALL DLC HFGV APG +AKHF+HDFGRFRLKWECHTEFA+YTFAQ+H+ A++TD+AFA
Sbjct: 55  HALLDDLCAHFGVVAPGGEAKHFYHDFGRFRLKWECHTEFATYTFAQAHEEAISTDDAFA 114

Query: 121 AAPLRHVPQQWLLALQGKIMVAAHVVLERAPEH--DAAASMARLFEGKLLSSSKVLQGGE 178
            APL H+PQQWL++L+GK+MVAAHVV+E   +   D A  M R+FEGKL+SSSKVLQGGE
Sbjct: 115 RAPLAHIPQQWLISLKGKLMVAAHVVVEPGDDDPADTARQMQRIFEGKLMSSSKVLQGGE 174

Query: 179 IWTDFVIQADGFSRFVVRDIDLRDLQGGRLVQRILEIETYRMMALLGLPHALQAGPVLNA 238
           IWTDF IQ+DGFSRF+VRDI LR+LQGGRL QRILEIETYRMMALLGLPHA Q+GP+LN 
Sbjct: 175 IWTDFKIQSDGFSRFIVRDIGLRELQGGRLAQRILEIETYRMMALLGLPHAQQSGPLLNE 234

Query: 239 IESDLATLTAAMVDAEHGGGNTSAGHAEDERILREITGLAARIEKMSLENSYRFSASQAY 298
           IE DLA LTAAMV +E   G T    AEDER+LR+ITGLAARIEK+SLENSYRFSASQAY
Sbjct: 235 IEGDLAALTAAMVQSEQSTGGTPEEQAEDERVLRKITGLAARIEKLSLENSYRFSASQAY 294

Query: 299 FRLVKARIEELRETRAEGVPTIGEFMERRLAPAMDTCTSVAHRQKALAERIAHTNDLLRT 358
           FRLV+ARIEELRE R EGVPTIGEFMERRLAPAM+TC ++A RQ+ALAERIAHTNDLLRT
Sbjct: 295 FRLVQARIEELREQRIEGVPTIGEFMERRLAPAMNTCQAIARRQEALAERIAHTNDLLRT 354

Query: 359 RIGIVQEQQNRQILESMNARAAQQLRLQQAVEGLSVAAISYYMVGLFGYLGKALKAAGVP 418
           RIGIVQEQQNRQILESMNARAAQQL+LQQAVEGLSVAAISYY++GL GY GKA KAAG+P
Sbjct: 355 RIGIVQEQQNRQILESMNARAAQQLKLQQAVEGLSVAAISYYVIGLIGYAGKAAKAAGLP 414

Query: 419 INPDVATGLMVPVFAVGVWFGLRRLHKSV 447
           INPD+ATGL+VPV A  VW GLRR+HK +
Sbjct: 415 INPDLATGLVVPVVAACVWLGLRRMHKGL 443


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,359,874
Number of extensions: 54518
Number of successful extensions: 202
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 365
Effective length of database: 1,203,190
Effective search space: 439164350
Effective search space used: 439164350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)