BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0136.0006.p (201 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311443|ref|YP_003775535.1| LysR family transcription regul... 255 2e-69 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 133 8e-33 gi|300311424|ref|YP_003775516.1| LysR family transcription regul... 126 1e-30 gi|300313769|ref|YP_003777861.1| transcription regulator protein... 125 3e-30 gi|300311458|ref|YP_003775550.1| LysR family transcription regul... 121 4e-29 >gi|300311443|ref|YP_003775535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 255 bits (651), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 129/191 (67%), Positives = 145/191 (75%), Gaps = 1/191 (0%) Query: 1 MQRYPRVHLEFQLSDERVDLIAEGIDLAFRAGQLPDSSLVARKLGNSHRGLLASPSYLAR 60 M YP+V LEF L+D R DLIAEGIDLAFR G LPDSSLVARKL SH L+ASP YL R Sbjct: 115 MHLYPKVQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLER 174 Query: 61 HGAPESLEALARHDCLAASNTPQAAIWRLEGPQGVESIRVTPRLCINTAQGLLRAARAGL 120 G P+SL L H CLA S PQ +W+LEGP G ES++VTPRLC+NTAQG LRAARAGL Sbjct: 175 QGTPQSLTDLTAHACLATSQAPQHTVWKLEGPHGPESVKVTPRLCVNTAQGQLRAARAGL 234 Query: 121 GIALLPMLVASEDLRRGSLVSILPQYQRDISGMYAVYPNRRQLSLAVSALIEFVADKVRH 180 GIALLP ++ASEDLR G+LV+ILP YQRD G YAVY +RRQL AVSALIEF ADK+ Sbjct: 235 GIALLPTMLASEDLRNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLER 294 Query: 181 G-ACNGEQSME 190 G A G Q+ E Sbjct: 295 GIADKGAQACE 305 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 133 bits (335), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 69/176 (39%), Positives = 103/176 (58%) Query: 1 MQRYPRVHLEFQLSDERVDLIAEGIDLAFRAGQLPDSSLVARKLGNSHRGLLASPSYLAR 60 ++R+P + L+ LSD VD+I EG D+A R +L DS+LV RKL ++ + ASP+YL Sbjct: 115 LERHPEISLDITLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDA 174 Query: 61 HGAPESLEALARHDCLAASNTPQAAIWRLEGPQGVESIRVTPRLCINTAQGLLRAARAGL 120 HG P LA+H ++ S W+ GP+G S+RV+ RL +N ++AA G+ Sbjct: 175 HGTPAHPHELAQHQTISYSYNQSKDEWQFNGPEGPVSVRVSSRLHVNNGDSCVQAALGGI 234 Query: 121 GIALLPMLVASEDLRRGSLVSILPQYQRDISGMYAVYPNRRQLSLAVSALIEFVAD 176 GI P + + LR G LVSIL Y G+YAVYP+R L + A+++F+ + Sbjct: 235 GITRQPTFMIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTE 290 >gi|300311424|ref|YP_003775516.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 126 bits (317), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 69/191 (36%), Positives = 111/191 (58%), Gaps = 2/191 (1%) Query: 2 QRYPRVHLEFQLSDERVDLIAEGIDLAF-RAGQLPDSSLVARKLGNSHRGLLASPSYLAR 60 +RYP V +E L+ D++ EG D++ A +LPDS L+ R+LG++ L ASP+YL + Sbjct: 117 KRYPDVAVELTLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGSTFSMLCASPAYLDK 176 Query: 61 HGAPESLEALARHDCLA-ASNTPQAAIWRLEGPQGVESIRVTPRLCINTAQGLLRAARAG 119 +GAP+ L H CL S W LEGP+G + V +N A+ +L A R G Sbjct: 177 YGAPQQPADLLNHACLQLVSPISPLDEWILEGPEGGTVVAVKSNFQVNVAEAMLTAIREG 236 Query: 120 LGIALLPMLVASEDLRRGSLVSILPQYQRDISGMYAVYPNRRQLSLAVSALIEFVADKVR 179 +GI +LP+ A + LR G++V +LPQ++ G+YA+YP+R+ L +S ++++ + V Sbjct: 237 MGIGVLPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWMHETVD 296 Query: 180 HGACNGEQSME 190 Q++E Sbjct: 297 RTLQEDHQALE 307 >gi|300313769|ref|YP_003777861.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 125 bits (313), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 74/175 (42%), Positives = 104/175 (59%), Gaps = 3/175 (1%) Query: 4 YPRVHLEFQLSDERVDLIAEGIDLAFRA-GQLPDSSLVARKLGNSHRGLLASPSYLARHG 62 +P V LE +LS+ RVD+I EG D+A R L DSSLV R G S + L ASP+Y+ HG Sbjct: 118 HPDVRLELELSNRRVDVIGEGFDVAMRVRSTLEDSSLVVRTFGTSQQVLAASPAYVRAHG 177 Query: 63 APESLEAL-ARHDCLAASNTPQAAIWRLEGPQG-VESIRVTPRLCINTAQGLLRAARAGL 120 +++++L + QA WRL+GP G V I P + + Q +++ A G+ Sbjct: 178 PFDTVQSLQGQRGLGPGGLPGQAQRWRLQGPDGEVAEIDYAPAMVTDDMQLVMQTAIGGV 237 Query: 121 GIALLPMLVASEDLRRGSLVSILPQYQRDISGMYAVYPNRRQLSLAVSALIEFVA 175 G+ALLP VA + RG LV +LPQY+ ++AV+P+RR L AV A IEF+A Sbjct: 238 GLALLPFNVAHGAIARGELVVVLPQYRGAPHQLHAVFPSRRGLVPAVRAFIEFLA 292 >gi|300311458|ref|YP_003775550.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 121 bits (303), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 100/180 (55%), Gaps = 1/180 (0%) Query: 2 QRYPRVHLEFQLSDERVDLIAEGIDLAFRAG-QLPDSSLVARKLGNSHRGLLASPSYLAR 60 Q YP V L+ LS+ +DL+ EGID+ F + Q D+S++ R+LG + L SP+Y+AR Sbjct: 116 QAYPEVALDISLSERSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVARVILCTSPAYIAR 175 Query: 61 HGAPESLEALARHDCLAASNTPQAAIWRLEGPQGVESIRVTPRLCINTAQGLLRAARAGL 120 GAPE E L+RH+CL S+ W + GV + + ++ N+ L A AG+ Sbjct: 176 QGAPEQPEDLSRHNCLNFSHEYLRHHWHVNTNGGVLDVPIVSKVVSNSGVLLRDLALAGM 235 Query: 121 GIALLPMLVASEDLRRGSLVSILPQYQRDISGMYAVYPNRRQLSLAVSALIEFVADKVRH 180 GI L P +DLR G LV +LP + M VYP+RR LS V + EF++ + H Sbjct: 236 GIVLRPSYSLGDDLRSGRLVQVLPGFDMGQVIMSMVYPSRRLLSAKVRSFAEFISARFPH 295 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 571,847 Number of extensions: 20531 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 27 Length of query: 201 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 120 Effective length of database: 1,236,335 Effective search space: 148360200 Effective search space used: 148360200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)