BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0135.0002.p
         (178 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311452|ref|YP_003775544.1| signal transduction containing ...   185   2e-48
gi|300311437|ref|YP_003775529.1| signal transduction containing ...    89   3e-19

>gi|300311452|ref|YP_003775544.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 399

 Score =  185 bits (470), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/144 (85%), Positives = 129/144 (89%)

Query: 2   NAISRGRLVKLLELVSHDADAPALEGLLKQDPALSYQLFKLVSSAAFGFSAHITNFTQAI 61
           N+ISR RL+KLLELV+ DADA  LE LLKQDPALSYQLFKLVSSAAFGFSAHITNFTQAI
Sbjct: 192 NSISRARLLKLLELVARDADANELESLLKQDPALSYQLFKLVSSAAFGFSAHITNFTQAI 251

Query: 62  NLLGRRQLQRWLQLLLYARFPGDESANPLLPRAAARAAMMEAMCHQIDGDRDEQDRAFIV 121
           NLLGRRQLQRWLQLLLYARFPGDESANPLLPRAAARAAMMEAM   ID  ++E DRAFI 
Sbjct: 252 NLLGRRQLQRWLQLLLYARFPGDESANPLLPRAAARAAMMEAMAQCIDCTQEELDRAFIT 311

Query: 122 GMFSLLDVLLAMPLRLIIEPLKLP 145
           GMFSLLD+LL MPL  IIEPLKLP
Sbjct: 312 GMFSLLDILLGMPLNDIIEPLKLP 335


>gi|300311437|ref|YP_003775529.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score = 88.6 bits (218), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 85/148 (57%), Gaps = 3/148 (2%)

Query: 5   SRGRLVKLLELVSHDADAPALEGLLKQDPALSYQLFKLVSSAAFGFSAHITNFTQAINLL 64
           S+  ++ LL L+  + D   +   +K+D ALS  L +LV++  +GF   I +  QA+ +L
Sbjct: 216 SKMVIMHLLTLLVRNVDNGEIVRFIKRDVALSLTLLRLVNTPVYGFQKFIDSLGQALIVL 275

Query: 65  GRRQLQRWLQLLLYARFPGDE--SANPLLPRAAARAAMMEAMCHQID-GDRDEQDRAFIV 121
           GRRQL+RWLQ+LL+A    ++  + +PL+  AA R  M+E +  +I  G R   + AF V
Sbjct: 276 GRRQLKRWLQILLFANTDKEQAHTMSPLMILAATRGKMLELITTRIRPGRRKMSEMAFTV 335

Query: 122 GMFSLLDVLLAMPLRLIIEPLKLPXPGR 149
           G+ SL+D L  M +  ++  + +    R
Sbjct: 336 GIMSLVDALFGMSMETVLRQITVSTEIR 363


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 426,727
Number of extensions: 13183
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 2
Length of query: 178
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 99
Effective length of database: 1,245,805
Effective search space: 123334695
Effective search space used: 123334695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)