BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0134.0001.p (232 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 369 e-104 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 74 1e-14 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 73 2e-14 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 60 1e-10 gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 60 1e-10 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 369 bits (948), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/225 (80%), Positives = 197/225 (87%), Gaps = 8/225 (3%) Query: 1 VLYIVFTITVTEWRTHFRRTMNDLDSRANSKAIDSLLNYETVKYFGNEDFEARRYDEGLQ 60 V YI+FTITVTEWRTHFRRTMN+LDS AN++AIDSLLNYETVKYFGNE+FEARRYDEGLQ Sbjct: 194 VCYILFTITVTEWRTHFRRTMNELDSHANTRAIDSLLNYETVKYFGNEEFEARRYDEGLQ 253 Query: 61 RYEAAAVKSQSSLSLLNSGQSAIIAIAVTLQGVISGKMSXTSATQGVISGKMSLGDLVLV 120 RYE AAVKSQSSLSLLN+GQSAIIAIAVTL AT GVI G M+LGD+VLV Sbjct: 254 RYERAAVKSQSSLSLLNTGQSAIIAIAVTL--------ILWRATVGVIDGSMTLGDMVLV 305 Query: 121 NAFMIQLYIPLNFLGVIYREIKQSLADMERLFSLLEQNKDVADAPDAKPLTTNGAALRFS 180 NAFMIQLYIPLNFLGV+YREIKQSLADMERLFSLLE++++VAD+ DAKPL T GA L F Sbjct: 306 NAFMIQLYIPLNFLGVLYREIKQSLADMERLFSLLEEHREVADSADAKPLKTQGANLHFD 365 Query: 181 HIDFSYESKRQILFDVDFEVAAGTTTAVVGHSGSGKSTLSRLLYR 225 H+DFSYE RQILFDVDF V AGTTTAVVGHSGSGKSTLSRLLYR Sbjct: 366 HVDFSYERNRQILFDVDFTVQAGTTTAVVGHSGSGKSTLSRLLYR 410 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 73.6 bits (179), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 115/228 (50%), Gaps = 17/228 (7%) Query: 2 LYIVFTITVTEWRTHFRRTMNDLDSRA---NSKAIDSLLNYETVKYFGNEDFEARRYDEG 58 +Y++ ++ T R +ND +++ S +++L +TVK E +++D+ Sbjct: 312 VYVLLSLVFTPL---LRERLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPRWQQKWDKQ 368 Query: 59 LQRYEAAAVKSQSSLSLLNSGQSAIIAIAVTLQGVISGKMSXTSATQGVISGKMSLGDLV 118 L Y AA + + +++SLL SG +++ VT+ + G + V+ +MS+G+LV Sbjct: 369 LAAYVAAGLTT-TNISLLASGAVGLVSKLVTVGIMWLGALL-------VVKNEMSVGELV 420 Query: 119 LVNAFMIQLYIPLNFLGVIYREIKQSLADMERLFSLLEQNKDVADAPDAKPLTTNGAALR 178 N Q+ P+ L ++ + +Q M RL +L+ +VA P NGA + Sbjct: 421 AFNMLAGQVASPILRLAQLWNDFQQIGISMSRLADVLDARTEVAGNRTRLP-RVNGA-IS 478 Query: 179 FSHIDFSYESK-RQILFDVDFEVAAGTTTAVVGHSGSGKSTLSRLLYR 225 F + F Y + +++ + ++ G +VG SGSGKSTL++L+ R Sbjct: 479 FDLVSFRYRPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQR 526 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 19/221 (8%) Query: 19 RTMNDLDSRANSKAIDSLLNYETVKYFGNEDFEARRYDEGLQRYEAAAVKSQSSLSLLNS 78 R D + A++ A + L TV+ F +E+ EARR+ + ++R A++ + SLL Sbjct: 220 RASQDRVADASAMAGEILNAMPTVQAFTHEEIEARRFAQSVERAFGTAMERVRARSLLT- 278 Query: 79 GQSAIIAIAVTLQGVISGKMSXTSATQGVISGKMSLGDLVLVNAFMIQLYIPLNFLGV-- 136 ++AI + ++ V+ G MS G+L F++ + LG Sbjct: 279 ----VVAILLVFGAIV---FVLWLGAHAVMEGSMSGGEL---GQFILYASLVAGSLGALS 328 Query: 137 -IYREIKQSLADMERLFSLLEQNKDVADA--PDA-KPLTTNGAALRFSHIDFSYESK--R 190 + + +++ ERL LL + V P+ P T NGAAL +DF Y S+ Sbjct: 329 EVMGDTQRAAGATERLLDLLAAHSPVQSVLLPEKLPPRTANGAALTVQGVDFHYPSRPGH 388 Query: 191 QILFDVDFEVAAGTTTAVVGHSGSGKSTLSRLLYRNDNERQ 231 L + V G T A+VG SG+GK+TL +LL R + +Q Sbjct: 389 PSLTQLSLTVQPGETVAIVGPSGAGKTTLFQLLLRFYDPQQ 429 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 60.5 bits (145), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 23/191 (12%) Query: 40 ETVKYFGNEDFEARRYD---EGLQRYE---AAAVKSQSSLSLLNSGQSAIIAIAVTLQGV 93 + +K FG +D+E R++ E L+ Y AA S ++ L + + +A+ + + + Sbjct: 208 QVIKIFGGQDYEKERFNRRAENLRSYTMRMTAAFSSTVPITQLMTATA--VAVVIVMALI 265 Query: 94 ISGKMSXTSATQGVISGKMSLGDLVLVNAFMIQLYIPLNFLGVIYREIKQSLADMERLFS 153 SG +G++++G V M+ L PL L I +++ +A E ++ Sbjct: 266 QSG------------NGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQRGMAAAEEVYK 313 Query: 154 LLEQNKDVADAPDAKPLTTNGAALRFSHIDFSYESKRQI-LFDVDFEVAAGTTTAVVGHS 212 L+++ + T L F + F+Y Q+ L +++ V AG T A VG S Sbjct: 314 LIDKTTERITGEALAGRAT--GQLDFVEVGFAYPGHEQLALKNINLHVEAGETIAFVGMS 371 Query: 213 GSGKSTLSRLL 223 G GKSTL L+ Sbjct: 372 GGGKSTLVSLI 382 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 60.5 bits (145), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 92/213 (43%), Gaps = 18/213 (8%) Query: 19 RTMNDLDSRANSKAIDSLLNYETVKYFGNEDFEARRYDEGLQRYEAAAVKSQ----SSLS 74 R D S + D+ N TVK F + EA Y R V Q S Sbjct: 210 RNQADARSLMTGRITDAYTNIATVKLFSHAGREAD-YARSAMREFLVTVNQQMRLVSGFE 268 Query: 75 LLNSGQSAIIAIAVTLQGVISGKMSXTSATQGVISGKMSLGDLVLVNAFMIQLYIPLNFL 134 ++N + ++ I T +S TQG K+ +G + A ++L +++ Sbjct: 269 VVNHLLNMVLIIGAT-------GVSLYLWTQG----KVGVGAVAASTAMALRLNGIAHWV 317 Query: 135 GVIYREIKQSLADMERLFSLLEQNKDVADAPDAKPLTTNGAALRFSHIDFSY--ESKRQI 192 + + + ++ + L + DV DAPDA+PL + LRF + FSY + R + Sbjct: 318 MWEMSSLFEHVGTVQDGINTLARAHDVKDAPDAQPLKVSQGELRFEGVSFSYGGAAPRPV 377 Query: 193 LFDVDFEVAAGTTTAVVGHSGSGKSTLSRLLYR 225 + +D + G +VG SG+GKST+ LL R Sbjct: 378 VDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLR 410 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 590,701 Number of extensions: 20919 Number of successful extensions: 234 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 231 Number of HSP's successfully gapped: 6 Length of query: 232 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 150 Effective length of database: 1,231,600 Effective search space: 184740000 Effective search space used: 184740000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)